Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_C08
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    26   0.42 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   9.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   9.0  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 170 PPSTPPLMENKVELPLKKIAAKRARESSS--PPAGL 271
           PP TPP  EN +++ L+ I + R   +++  P AG+
Sbjct: 45  PPVTPPQGENMLDMDLRGIYSNRTDFTTTFRPTAGM 80


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 589 LRWGTGRLNXDPE 551
           LRWGTG +  +PE
Sbjct: 146 LRWGTGAVTVNPE 158


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = +2

Query: 422  SPEPLPPPPA-HGMN 463
            SPEP PPPP  H  N
Sbjct: 1856 SPEPPPPPPRNHDQN 1870


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 37  TPSLERKRAANNTSFVN*KESFYLVECSHSNQNVHSARSLRT 162
           TP L RK+   NT+ +    S+  ++ +++N   +S+++  T
Sbjct: 341 TPKLARKQFQKNTTGLERSRSWSSLDNTNTNDQDYSSQNYLT 382


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 410 DGTCSPEPLPPPP 448
           D    P+P PPPP
Sbjct: 334 DSDTPPKPAPPPP 346


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 425  PEPLPPPPAHGMNML 469
            P P PPPP+ G   L
Sbjct: 1355 PPPPPPPPSSGQAYL 1369


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 428 EPLPPPP 448
           EPLPPPP
Sbjct: 373 EPLPPPP 379


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 154 NFEQSGHSG*NGNIQQDKNFLFNSQNL 74
           NF +S H+G NG   Q     FNS ++
Sbjct: 404 NFRKSEHNGTNGYQYQVVGKWFNSLDI 430


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 154 NFEQSGHSG*NGNIQQDKNFLFNSQNL 74
           NF +S H+G NG   Q     FNS ++
Sbjct: 494 NFRKSEHNGTNGYQYQVVGKWFNSLDI 520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,323
Number of Sequences: 438
Number of extensions: 3317
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)