Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_C05
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.51
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 28 2.1
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.6
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 4.8
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.8
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 26 6.3
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 8.3
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 26 8.3
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 26 8.3
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.51
Identities = 23/100 (23%), Positives = 41/100 (41%)
Frame = +2
Query: 350 TGTETKSNSVTVQSLPNASSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 529
T T S +T + ++S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 530 VEGVNVLATPSSSRITIGGLALMHQATLPAISATSTRSSN 649
V +TP ++ ++ + +T P S+ T SS+
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSS 578
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = +2
Query: 362 TKSNSVTVQSLPNASSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 535
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 536 GVNVLATPSSSRITIGGLALMHQATLPAISATSTRSSN 649
V +TP ++ ++ + +T P S+ T SS+
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTST-PVTSSNYTISSS 519
Score = 26.6 bits (56), Expect = 4.8
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Frame = +2
Query: 476 SLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPAISATSTRSSNPD 655
S +P T C T+ + G + L+TP + + + ++P I TST S++ +
Sbjct: 219 SSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTS---STSIP-IPPTSTSSTDTN 274
Query: 656 SIHQPXPD---LTSISINPLTPYXXEFAPGLKPRCIRGHQXXSPP 781
S P TS SI P P + P PP
Sbjct: 275 SSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPP 319
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 2.1
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +2
Query: 350 TGTETKSNSVTV-QSLPNAS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 520
TG +T+ QSL N S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 521 DVTVEGVNVLATPSSS 568
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 597 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 478
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 332 RLYFDLTGTETKSNSVTVQSLPNASSIIKGYRD-AYLVN 445
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 587 LALMHQATLPAISAT-STRSSNPDSIHQPXPDLTSISINP 703
L + Q +P ++ T + R++NP++ P P+ T+ NP
Sbjct: 66 LQSLGQGVVPNVNPTDANRTANPNTNSNPNPNATNAQPNP 105
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 413 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 502
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 467 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPAISATSTRSS 646
+ P+L P+ L + + E N + PS S + ++ + P I+A S SS
Sbjct: 400 TTPTLIEPIQETLMTQSPIIECEPFNTVK-PSVSPEEVHDISQFNHRNDPPITAASVDSS 458
Query: 647 NPDSIHQ 667
N S+H+
Sbjct: 459 NSFSVHR 465
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 582 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 448
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 592 PYASSHPPCDLGYINPIIKS 651
PYA+ HP L Y NP S
Sbjct: 96 PYAAEHPFSRLAYFNPAFNS 115
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 28 PPLFRSFCRGCFATGFLDDLFMEEIVPLXRFCRFGHSL 141
P +F +F L+ LF+ + P RFC +G+ L
Sbjct: 245 PVVFGAFPSLHAGWAMLEALFLSHVFPRYRFCFYGYVL 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,405,947
Number of Sequences: 5004
Number of extensions: 65432
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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