Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_C05
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0061 + 948663-948708,949638-949993 31 1.2
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 31 1.6
11_01_0115 - 889159-889921,889962-890053,890141-890359,890738-89... 30 2.9
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 30 2.9
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 30 2.9
01_05_0227 - 19512866-19514983 29 6.6
08_02_0875 + 22103903-22106293 28 8.7
03_02_0004 - 4869853-4871106 28 8.7
>09_01_0061 + 948663-948708,949638-949993
Length = 133
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 101 LCL*XVSAASAIPSLVNAFSSSKPPQTDNPSAR 199
LC+ VS+ PS N +SS KPP T P+ R
Sbjct: 91 LCVIHVSSKDHRPSQDNPYSSDKPPPTSPPAQR 123
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 30.7 bits (66), Expect = 1.6
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = +2
Query: 356 TETKSNSVTVQSLPNASSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 529
TE +N V V L ++ ++ GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLHSSQAM--GYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 530 VEGVNVLATPSSSRITIGGLALMHQATLPAISATSTRS 643
+ +N+L P G L+HQ + A T +
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQEGAREVYACCTHA 262
>11_01_0115 -
889159-889921,889962-890053,890141-890359,890738-891835
Length = 723
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +2
Query: 551 ATPSSSRITIGGLALMHQATLPAISATSTRSSNPDSIHQ--PXPDLTSISINPLTPYXXE 724
AT + RI + ++ A PA+SA R S+P Q P P + + P +P
Sbjct: 162 ATDAVKRIVLAPKSVSEAAPPPAVSAAKRRFSSPAPSKQRDPSPSVKGGASRPSSPSVKG 221
Query: 725 FAPGLKPRCIRGHQXXSPPRP 787
+ P +RG + P P
Sbjct: 222 ASRASSP-AVRGTPRATSPAP 241
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 623 SATSTRSSNPDSIHQPXPDLTSISINPLTPYXXEFAPGLKPRCIRGHQXXSPPRPGH 793
S S S+P S +P P +++ P+ P+ K I+ +PPRP H
Sbjct: 530 SGMSKTKSSPSSSRRPSPQRQTVAGIPIVPFTVS-----KRAHIKAESEKTPPRPAH 581
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/86 (25%), Positives = 37/86 (43%)
Frame = +2
Query: 308 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNASSIIKGYRDAYLVNLEAVVFPSAPSLKI 487
Q I + ++ L N TV + NA + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 488 PVTVDLCWTTADVTVEGVNVLATPSS 565
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 534 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 442
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>08_02_0875 + 22103903-22106293
Length = 796
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 536 GVNVLATPSSSRITIGGLAL-MHQATLPAISATSTRSSNPDSIHQPXPDLTSISINPLTP 712
G + P++ I G L +H A P ++A S R NP S PDL + +N L
Sbjct: 483 GSSTRQAPATGTILFEGTHLGVHPA--PVVAAFSARGPNPQSPEILKPDLIAPGLNILAA 540
Query: 713 YXXEFAP 733
+ P
Sbjct: 541 WPSGVGP 547
>03_02_0004 - 4869853-4871106
Length = 417
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 20 RFAPLFSDPSVEGVLQLDFLMTYSWKKLCL*XVSAASAIPSLVNAFSSSKPPQT 181
R FSDPS +L L FL++ K VS IP L ++ S P +T
Sbjct: 104 RVLAAFSDPSTGALLALPFLLSPDVKLQASPLVSRPLDIPLLASSASLVDPART 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,265,033
Number of Sequences: 37544
Number of extensions: 513820
Number of successful extensions: 1425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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