Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_C03
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 35 0.077
07_01_0080 + 587674-588510 34 0.18
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.18
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.31
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 0.95
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.3
12_01_0524 - 4167867-4168445 29 3.8
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.7
01_06_1147 + 34892415-34893702,34894051-34894676 29 6.7
01_01_0929 - 7344911-7345978 29 6.7
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.8
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 8.8
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.8
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.8
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.8
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 35.1 bits (77), Expect = 0.077
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -3
Query: 741 GXGPGGPFLRHXPXEPWPPXXXLPPGPGXXPPP 643
G GPG L E WPP LPP P PPP
Sbjct: 4 GTGPGAELLSPGEAE-WPPELRLPPPPPPHPPP 35
>07_01_0080 + 587674-588510
Length = 278
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -3
Query: 735 GPGGPFLRHXPXEPWPPXXXLPPGPGXXPPPXXXRXXPXXLTR 607
G G F R P P PP PP P PPP P TR
Sbjct: 83 GGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPPPPPLFTR 125
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.18
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 343 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.1 bits (72), Expect = 0.31
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Frame = -2
Query: 898 PPRPPXXXAXNXXAXPXXPPRXAGXXRXXGXGXPRXXXGXRXPPXXXGPXXPXP-----X 734
PP PP A P P G P G PP GP P P
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Query: 733 AGGPXPP 713
GGP PP
Sbjct: 374 KGGPPPP 380
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Frame = -2
Query: 898 PPRPPXXXAXNXXAXPXXPPRXAGXXRXXGXGXPRXXXGXRXPPXXX---GPXXPXPXAG 728
PP PP A P PP P+ PP GP P P G
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Query: 727 GPXPPA 710
PPA
Sbjct: 386 ASRPPA 391
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.5 bits (68), Expect = 0.95
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -3
Query: 783 AXAXPRGXXARXXXGXGPGGPFLRHXPXEPWPPXXXLPPGPGXXPPP 643
A A P + G G G P P P P PPGPG PPP
Sbjct: 330 APAPPPPAPSPSAAGAGSGPP----PPPPPAAPAAPRPPGPGPGPPP 372
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/62 (33%), Positives = 21/62 (33%)
Frame = -2
Query: 898 PPRPPXXXAXNXXAXPXXPPRXAGXXRXXGXGXPRXXXGXRXPPXXXGPXXPXPXAGGPX 719
PP PP A P P AG G G P PP P P P GP
Sbjct: 321 PPPPPAHPAAPAPPPPAPSPSAAG----AGSGPP-------PPPPPAAPAAPRPPGPGPG 369
Query: 718 PP 713
PP
Sbjct: 370 PP 371
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -3
Query: 735 GPGGPFLRHXPXEPWPPXXXLPPG-PGXXPPPXXXRXXP 622
G GGP P P P +PPG PG PPP R P
Sbjct: 1194 GVGGP-----PTPPGAPAPPMPPGVPGGPPPPPGGRGLP 1227
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 340 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 161
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 160 CEERVDHEGQ*C 125
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 241 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 357
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +3
Query: 345 PRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPGIKRLG 470
P N+ G + C LQP PGT S P T+PSPG + G
Sbjct: 210 PANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPGKAKKG 250
>01_01_0929 - 7344911-7345978
Length = 355
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 723 PFLRHXPXEPWPPXXXLPPGPGXXPPP 643
PFL P P PP PP PPP
Sbjct: 9 PFLLWSPAPPTPPLPPSPPSKTRRPPP 35
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 247 VHRANTGRSSNELDRQTTELERRGVG 324
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -3
Query: 732 PGGPFLRHXPXEPWPPXXXLPPGPGXXPPPXXXR 631
PG P P P PP + PG PPP R
Sbjct: 246 PGLPLPPPPPPPPGPPPREIVPGQTLLPPPPPPR 279
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 76 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 216
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 422 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 300
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,842,785
Number of Sequences: 37544
Number of extensions: 532290
Number of successful extensions: 2384
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2309
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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