Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_B24
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 124 2e-29
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 34 0.031
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 31 0.29
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 30 0.38
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 29 0.88
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 29 1.2
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 28 1.5
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.5
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 2.0
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 28 2.0
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 2.0
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 6.2
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.2
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 6.2
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 6.2
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.2
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 26 8.2
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 26 8.2
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 124 bits (299), Expect = 2e-29
Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 7/207 (3%)
Frame = +1
Query: 163 EAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVVFT-D 339
E +E C +C + + Y + C+H +C C+ R+R L EC C+ + V+ T D
Sbjct: 73 EQDEDEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFCKTEWDTVLITKD 132
Query: 340 SIHPYKELGNRECPDRLFERQYKIVFCSEDIKNAYENLLENRCK--ICDKIPPFRNFSLL 513
++ + P + + + IV+ E + LL+ C CD + + L
Sbjct: 133 HEIDIHDVDLAKLPFQ--DEKLGIVYSDEHAQEESNLLLQFNCPEDACDIT--CKGWFDL 188
Query: 514 NDHMRRVHERFFCDLCVNHLKIFTNERRCYTRQELAHHRRKGD----LDDTSHRGHPLCE 681
H + H +FFCDLCV + K+FT+E ++++ L H GD L+ T +GHP CE
Sbjct: 189 KLHAKVKHHKFFCDLCVKNKKVFTHEHTLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCE 248
Query: 682 FCEKRFMDPDELYRHLRKEHLYCHLCD 762
FC F D DEL++H R++H C++CD
Sbjct: 249 FCNTHFYDDDELFKHCREKHERCYICD 275
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 33.9 bits (74), Expect = 0.031
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Frame = +1
Query: 112 YRNAFTES*INNTTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQN 291
Y A E ++ ++ E + E C +CF + + C H C C M+ L
Sbjct: 145 YETAVAEF-LHMEDLLQENVSRELECQICFGMLYDPVVSPCGHTFCGPC--LMQALTQSP 201
Query: 292 ECPICRKDLLRVVFTD--SIHPYKELGNRECPDRLFERQ 402
+CP CR L V + H PD ERQ
Sbjct: 202 QCPTCRFGLPSPVVLEHAKSHSITTFLRDFYPDNWLERQ 240
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 163 EAQANENTCVVCF-KNVLYYSIGECDHPVCFEC 258
E +E TC +C+ + L + ECDH C C
Sbjct: 123 EVVHHEGTCEICYDEGCLPFFSAECDHEFCLAC 155
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 30.3 bits (65), Expect = 0.38
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 231 LAN*VVQNVLETNYASILVRLSLRHDCCI 145
LA VVQNVL N +S+LV+ + R+ CI
Sbjct: 312 LAEPVVQNVLWVNTSSVLVQFTNRNSTCI 340
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 29.1 bits (62), Expect = 0.88
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 154 IMSEAQANENTCVVCFKNVLYYSIGECDHPVCFEC-STRMRVLCLQNECPICRK 312
+ S + + CV+C + S C H C C + + +CP+CR+
Sbjct: 195 VPSSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRR 248
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 629 DVKVTLMIPHTGAIHFVSSVRNDSWILMSCTVTCARSTCTVICV-MRWKE 775
++ + + H+G H S+RNDS +S + + + + ++WK+
Sbjct: 137 NIGMIFLYTHSGMTHITPSIRNDSTKFLSLLINACKDRLSSSAISLQWKK 186
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 28.3 bits (60), Expect = 1.5
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Frame = +1
Query: 121 AFTES*INNTTIMSEAQANENTCVVCFKN---VLYYSIGEC-DHPVCFECSTRMRVLCLQ 288
A+ E IN + A+ E V N +L+ S+GE D + F CS+ +R+L +
Sbjct: 334 AYHEEEINPDNTIYRAKWEEYFGGVILHNAFFILHVSLGEVPDFHLLFHCSSDVRILQVV 393
Query: 289 NECPICRKDLL-----RVVFTDSIHPYKEL 363
NE + + V++ D HP K L
Sbjct: 394 NESMPIKSEFFILTTESVLWMDIQHPQKPL 423
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 187 CVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDL 318
C +C + + C H C+EC + L CP CR+ L
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYEC--LLNWLKESKSCPTCRQKL 126
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 676 CEFCEKRFMDPDELYRHLRKEHL 744
C FC + F D L RH+++ HL
Sbjct: 58 CSFCNRAFARSDVLNRHVQQMHL 80
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +1
Query: 148 TTIMSEAQANENTCVVCFKNVLYYSIGE-----CDHPVCFECSTRMR 273
TT ++ AN C +CF LYY C P+C EC +R
Sbjct: 138 TTAITTIYANAMECPICF---LYYPSNFNYTRCCAQPICSECFVEIR 181
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +1
Query: 76 ASTYSQFNKTLGYRNAFTES*INNTTIMSEA--QANENTCVVCFKNVLYYSIGECDHPVC 249
A+ F++ G+R NN + ++TC +C + +C+ VC
Sbjct: 45 AAVKEAFSENRGFRTCHVCHRKNNMRLKVGTCESCKKHTCAICIRQC-----HKCESNVC 99
Query: 250 FECSTRMRVLCLQNECPIC 306
CS + R + CP C
Sbjct: 100 SMCSKQERTFESEAFCPSC 118
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +1
Query: 655 SHRGH-PL-CEF--CEKRFMDPDELYRHLR 732
SH G P C + C+KRF DEL RH+R
Sbjct: 25 SHTGEKPFECSYPSCKKRFTRRDELIRHVR 54
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +1
Query: 178 ENTCVVCFKNVLYYS----IGECDHPVCFECSTRMRVLCLQNECPICR 309
+ C+VC N + +C+H EC + + QN CP+CR
Sbjct: 522 DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQW-LTSSQNSCPLCR 568
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 625 HRRKGDLDDTSHRGHPLCEF--CEKRFMDPDELYRHLR 732
H+ + T + H +C F C KRF DEL RH R
Sbjct: 40 HQTRHIRTHTGEKPH-VCTFPGCAKRFSRSDELTRHAR 76
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Frame = -3
Query: 530 LLM*SFSKLKLRNGGILSQILHRFSN------KFSYAFFMSSEQN 414
+L+ + L NGGI+ Q+L SN KF+ FF++ + N
Sbjct: 79 VLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPN 123
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +1
Query: 229 ECDHPVCFECSTRMRVLCLQNECPICR 309
+C H C+ C L CPIC+
Sbjct: 212 DCGHTYCYACIMSRLKLVNNVSCPICK 238
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -2
Query: 411 NFVLSFKQSIRAFPVPKLLVGMNRISKYNPQ*IFTTYRTLILKTEHPHPSRALET 247
+F FK+ + A + ++ ++R +P+ + T T ++ T H SRA +T
Sbjct: 49 SFAREFKELVAAHGLKGIIQSLHR-DYDDPELLKVTLETCLILTRHDDDSRASDT 102
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = -2
Query: 621 CQFLSCITPSFIGKNLQMINTKVTKKPFMNPSHVIIQQTKVAERWYLITDFTPILQ*VFI 442
C FL+ + K L+ I K N + ++ +QTK RW + +T + +
Sbjct: 93 CIFLATKVEDSVRK-LRDIVINCAKVAQKNSNVLVDEQTKEYWRWRDVILYTEEVLLEAL 151
Query: 441 CIFYVFRTEYNFVLSF 394
C + Y +VLSF
Sbjct: 152 CFDFTVEHPYPYVLSF 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,651,114
Number of Sequences: 5004
Number of extensions: 79404
Number of successful extensions: 272
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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