Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B24
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    31   0.019
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    28   0.100
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    27   0.17 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    26   0.40 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   2.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.6  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 30.7 bits (66), Expect = 0.019
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 13/126 (10%)
 Frame = +1

Query: 394 ERQYKIVFCSE--DIKNAYENLLEN---------RCKICDKIPPFRNFSLLNDHMR-RVH 537
           E+ Y+ + C +  D KN Y++ L +         RC IC K   F   + L  H R    
Sbjct: 59  EKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKT--FAVPARLTRHYRTHTG 116

Query: 538 ER-FFCDLCVNHLKIFTNERRCYTRQELAHHRRKGDLDDTSHRGHPLCEFCEKRFMDPDE 714
           E+ + C+ C     +         ++ L+ HRR      T  R +  C+ CE+ F    +
Sbjct: 117 EKPYQCEYCSKSFSV---------KENLSVHRRI----HTKERPYK-CDVCERAFEHSGK 162

Query: 715 LYRHLR 732
           L+RH+R
Sbjct: 163 LHRHMR 168


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 28.3 bits (60), Expect = 0.100
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 676 CEFCEKRFMDPDELYRHLRKEHL--YCHLC 759
           C++CEK ++    L  H+R   L   CHLC
Sbjct: 19  CKYCEKVYVSLGALKMHIRTHTLPCKCHLC 48


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +1

Query: 598 CYTRQELAHHRRKGDLDDTSHRGHPLCEFCEKRFMDPDELYRHLR---KEHLY-CHLCDA 765
           C+ R    HH +      T  + +  C  C+++F+    L RHLR    E  Y C LC A
Sbjct: 15  CHKRFTRDHHLKTHMRLHTGEKPYH-CSHCDRQFVQVANLRRHLRVHTGERPYACELCAA 73



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = +1

Query: 676 CEFCEKRFMDPDELYRHLR----KEHLYCHLCD 762
           C  C KRF     L  H+R    ++  +C  CD
Sbjct: 12  CPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCD 44


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 622 HHRRKGDLDDTSHRGHPLCEFCEKRFMDPDELYRHLRKEH 741
           H + K +  DT +    +CEFC +R+   + L  H   +H
Sbjct: 24  HFQDKHEQSDTLY----VCEFCNRRYRTKNSLTTHKSLQH 59


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 216 VQNVLETNYASILVRLSLRHDCCIVYLGFCKSVS 115
           VQ V++  YA  L   +L+ D C    G C S++
Sbjct: 330 VQFVVDAVYAFALALHNLQKDVCSKLKGLCPSMA 363


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 216 VQNVLETNYASILVRLSLRHDCCIVYLGFCKSVS 115
           VQ V++  YA  L   +L+ D C    G C S++
Sbjct: 420 VQFVVDAVYAFALALHNLQKDVCSKLKGLCPSMA 453


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 725 TCARSTCTVICVMRWKEFYY 784
           T  R T T + + +W++F Y
Sbjct: 412 TMERQTQTEVWIPKWRQFLY 431


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +2

Query: 65  TNSELPRTRNLIKHSV 112
           +N+EL RT+ L+K+++
Sbjct: 86  SNNELVRTKTLVKNAI 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,725
Number of Sequences: 438
Number of extensions: 5404
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)