Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B23
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    28   1.5  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   2.0  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    27   4.5  

>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 718 IVHPSKGNVSWDXTVVRQVSLPY 786
           I+HP   ++SWD  + R++ +PY
Sbjct: 451 IMHPWFRDISWDKILTRKIEVPY 473


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 425 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 559
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 22/85 (25%), Positives = 40/85 (47%)
 Frame = +1

Query: 4   WNSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLXEFDSSLAL*GDM 183
           WN+Q+  +  ++++     IP  P  +L   QP  +A+  +  +      + S A     
Sbjct: 298 WNAQVLLNTFNNSYRI--RIPRAPAEFLLLNQPIFQAFNKKCSRFDHEPVEWSCA----Q 351

Query: 184 RGVA*VGDRFARSSLKNHYFHCFIT 258
           +G+    D+FA S L+   F CFI+
Sbjct: 352 KGI----DQFAHSFLRTPMFDCFIS 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,614
Number of Sequences: 5004
Number of extensions: 70910
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)