Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B22
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.22 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    28   1.6  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   2.1  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    27   3.6  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   6.3  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    26   8.3  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 23/89 (25%), Positives = 42/89 (47%)
 Frame = +3

Query: 102  DSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQREVHSRLSDARNDNWHSY 281
            DS   I+LS DLR +  +R +A+   +    +S   +++R + E H+     RND  H  
Sbjct: 2205 DSISAIQLSKDLREIFHLRISALDILNSSTINSLIRKLKRRRTESHT-----RNDKIHES 2259

Query: 282  LEQLAPSHQAYWRLARTLKSETIATMPPL 368
            ++Q     +    + +TL  +    +P L
Sbjct: 2260 IDQFFKDIRKQILIPQTLCDKIEQILPCL 2288


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 156  RNAAIRAYDRLPTHSNR-IRMRRLQREVHSRLSDARNDNWHSYLEQ 290
            +NAA+   D L THS R +   RL      R +   ++ WH  LE+
Sbjct: 1790 QNAALAIMDSLKTHSPRLVEQARLVSHELIRAAILWHEQWHEGLEE 1835


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +2

Query: 491 SRQGGRAQSFPAALGRVTPHYHRRS*RRDPQPTT*EGTRLRRHPQPRA*TLASPTYSNVG 670
           SR+GG A +  A   + + +Y R S R+         T    HP+ R  +L +   +   
Sbjct: 115 SRRGGAASNAAAIAAKKSGYYERTSTRKRSLTVPTPRTSFPHHPRSRRFSLKNAAIATSY 174

Query: 671 YNFK 682
           + FK
Sbjct: 175 HKFK 178


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -1

Query: 784 RTIDVXNFLSLPLSIPITSASFHTAGKMQCVIAAFKIVANIAISWT---GKSLSA 629
           R ID  ++ SLPL+IP+  +   T   +  ++ +F   A I  +W     K++SA
Sbjct: 238 RLIDAISYYSLPLAIPLLCSGIGTIIGVDDLLMSF--FAGILFNWNDLFSKNISA 290


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 99  EDSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRR-LQREVHSRLSDARNDNWH 275
           ED++ R R S    +    R++  R+ +  P  S   R    LQ    SR S AR+  W 
Sbjct: 11  EDNYSRDRRSRFTEDSYSRRDSQ-RSGNEAPRESRYYRKEEHLQERSRSR-SPARDSRWK 68

Query: 276 SYLEQLAPSH 305
           S     AP+H
Sbjct: 69  SSSSGFAPAH 78


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 3   LDLSP--EDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLS 128
           +DLSP  ++  + ++I+T HI+  + + SK+         IRLS
Sbjct: 109 VDLSPNKQEDKKDLHIVTQHITPQLTKESKKGSSSAMDKSIRLS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,320
Number of Sequences: 5004
Number of extensions: 66717
Number of successful extensions: 215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)