Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_B22
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 37 0.019
06_03_0722 - 23869981-23870250 33 0.30
07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291 30 2.1
11_06_0563 - 25018219-25018658,25020381-25020459 30 2.8
11_03_0021 + 9010846-9011672,9011753-9013700 30 2.8
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371... 29 3.8
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 29 3.8
09_01_0041 + 746494-746691,747301-747495,750509-750631,751457-75... 29 5.0
07_03_1471 + 26751684-26752307 29 5.0
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693... 29 5.0
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 29 6.6
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 29 6.6
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 29 6.6
12_02_0710 - 22371771-22372052,22372368-22372580 28 8.7
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 37.1 bits (82), Expect = 0.019
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 PITTDEVRDAIHNLQPRKAPGSDG--IHN--RALKLLPVQLIAMLATILNAAMTH 698
P + DE++DA+ + P KAPG DG +HN K P+ L +L I + + +
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206
>06_03_0722 - 23869981-23870250
Length = 89
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +2
Query: 428 RCTARAVHHQHSTRGPRTHRVSRQGGRAQSFPAALGRV--TPHYHRRS*RRDPQPTT*EG 601
RC A H+ RGPR + R S P G V P RR+ RRD P +G
Sbjct: 29 RCAAIEELHRRKRRGPRRRSTTGTSSRPSSTPKGCGGVLRLPPPGRRARRRDQWPNDGDG 88
Query: 602 T 604
+
Sbjct: 89 S 89
>07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291
Length = 152
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -2
Query: 513 CARPPCRLT-RCVRGPRVECWWCTALAVHRPAAQPCHRHRMPVVGLKGVRGEA*WL 349
C+ PC RC G +E WC V A C R P G G + W+
Sbjct: 66 CSAQPCNCVGRCCNGSTLEHPWCGLKPVRDKAIDDCFRTATPTRIKLGDGGTSFWV 121
>11_06_0563 - 25018219-25018658,25020381-25020459
Length = 172
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 464 TRGPRTHRVSRQGGRAQSFPAALGRVTPHYHRRS*RRD 577
+ GPR R+ ++ ++ PAA G V P Y +S RR+
Sbjct: 113 SNGPRPTRIRQRRASSRPDPAAAGLVPPGYGAKSGRRE 150
>11_03_0021 + 9010846-9011672,9011753-9013700
Length = 924
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 105 SFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQR 230
S + IRL+ DL+ L ++R+ AI D + T S+ +R R + R
Sbjct: 677 SSNSIRLAGDLKCLKKLRDLAIAVEDPVGTKSSTLRYREVVR 718
>08_01_0418 -
3716226-3716279,3716531-3716581,3716656-3716751,
3717037-3717194,3717303-3717417,3717511-3717564,
3717843-3717950,3718494-3718583,3718818-3718856,
3718993-3719172,3719264-3719576,3719659-3719834
Length = 477
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 537 ALPPITTDEVRDAIH--NLQPRKAPGSDGIHNRALKLLPVQLIAMLATILN 683
+ PP+T +++ +A+H L P ++ I N LLP + LAT+++
Sbjct: 6 SFPPLTPEQIAEALHTYGLAPTANLRAEDIANPQPDLLPAVISNFLATVVD 56
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 29.5 bits (63), Expect = 3.8
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +3
Query: 54 HISSAIIRSSKEVDVEDSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQRE 233
HI + I SSK D+E SF ++ R I + R+ + +R RR +R+
Sbjct: 322 HIDAGIDSSSKHADLEKSFG-----------VKARIPGISFWSRMIPNPSR---RRYRRK 367
Query: 234 VHSRL-SDARNDNWHSYLEQLAPSHQAYWR 320
HS+L SD N + L + A + AY++
Sbjct: 368 AHSKLISDTDNSSQQRILRRSAYAAVAYFQ 397
>09_01_0041 +
746494-746691,747301-747495,750509-750631,751457-751636,
752772-753058,754343-754907
Length = 515
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 210 RMRRLQREVHSRLSDARNDNWHSYLEQLAPSHQAYWRLARTLKSETIATMPPLVRPSGQP 389
R + L E + D S+++++A + + +W A +S+T+++ L GQP
Sbjct: 372 RRQALGEERDGLAAGVEGDGIGSWVDRVAMARRRHWSDALPARSDTLSSGSGLPGAGGQP 431
Query: 390 P 392
P
Sbjct: 432 P 432
>07_03_1471 + 26751684-26752307
Length = 207
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 613 SEPGAFLGCRLWIASLTSSVVMGGNASEGGREALRS 506
S P + + SLTS+ V G S GGR +RS
Sbjct: 5 SNPSLIVAAIFLVISLTSATVANGGRSGGGRRLVRS 40
>01_06_0393 + 28968873-28968918,28969048-28969084,28969165-28969384,
28969557-28969715,28969831-28969950,28972154-28972240,
28972329-28972418,28972516-28972602,28972761-28972877,
28972945-28973028,28973585-28975324,28975670-28975816,
28975998-28976431,28976523-28976667
Length = 1170
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 836 ELSVQFKRSKTVVISISENYRRXKFLVVAAKYTDN 732
+L + K++KTVV +E Y R +V K+ DN
Sbjct: 943 QLQISDKKTKTVVSMATEEYTRCSAVVEFVKFLDN 977
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 555 TDEVRDAIHNLQPRKAPGSDGIHNRALK 638
T EV + I +QP KAP DGI+ LK
Sbjct: 224 TQEVDNLIKVIQPDKAPSPDGINGYFLK 251
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 425 GRCTARAVHHQHSTRGPRTHRVSRQGGRA-QSFPAALGRV 541
G+ RA HHQH+ P V GG+A + P L R+
Sbjct: 320 GKGKHRAAHHQHTESAPPVTLVGGGGGKAGKVVPVELPRI 359
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = -3
Query: 179 VGPDCRVPNS*EIPKIGGQSDAVEAVLHIDFFRRSNDRGRYVIGNDVYGFD 27
+G + RV N + + G+ +A E+ LH ++++ RG ++ NDVYG D
Sbjct: 903 LGGNLRVMN---LENVSGKDEASESKLH----QKTHLRGLHLSWNDVYGMD 946
>12_02_0710 - 22371771-22372052,22372368-22372580
Length = 164
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 410 QG*AAGRCTARAVHHQHSTRGPRTHRVSRQGGRAQS 517
+G A + T++ +H ST GP+ H ++GGR ++
Sbjct: 97 KGPQADQITSKWANHFVSTPGPKEHHPRQRGGRKEA 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,678,548
Number of Sequences: 37544
Number of extensions: 546855
Number of successful extensions: 1596
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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