Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B22
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          25   0.70 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          25   0.93 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          25   0.93 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          25   0.93 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.93 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    25   0.93 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  

>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 186 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 281
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDGNSY 245


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 186 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 281
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 186 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 281
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 186 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 281
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 186 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 281
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 186 LPTHSNRIRMRRLQR--EVHSRLSDARNDNWHSY 281
           + ++S R R R  QR    HSR  D+R+++ +SY
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 675 ILNAAMTHCIFPAVWKEADVIGILSGNDKKFXTSIVLRDRNYXGLRT 815
           ++  A  +CI     +  D +GI +G       S  L ++ Y  LRT
Sbjct: 47  VVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYNMLRT 93


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 210 RMRRLQR--EVHSRLSDARNDNWHSY 281
           R R  QR    HSR  D+R+++ +SY
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 86  RSRCGGQLPPHQTVP 130
           RS  GGQLPP    P
Sbjct: 402 RSPAGGQLPPSAGAP 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,693
Number of Sequences: 438
Number of extensions: 5607
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)