Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B21
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/47 (21%), Positives = 21/47 (44%)
 Frame = +3

Query: 543 PGDLGLHQPDHQNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASG 683
           PG   + +P +      T +TP   S+  +P ++ +  V +   + G
Sbjct: 215 PGHAQMGRPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSGG 261


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +3

Query: 534 PPSPGDLGLHQPDHQNPRF--HTPTTPDLTSISINPLNAVLXGVRAGVKASGCHQXLHQR 707
           P  PGD G H P     RF  H P          N +N      RA  +A+   Q L   
Sbjct: 335 PGVPGDHGDHAPKQTEVRFKVHDPKAHSKGGTLENTING-----RADEEAAPAPQHL--- 386

Query: 708 ISPPRHWAXLXGVSP 752
           I P +    L G++P
Sbjct: 387 IHPGKDINKLYGMTP 401


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +3

Query: 534 PPSPGDLGLHQPDHQNPRF--HTPTTPDLTSISINPLNAVLXGVRAGVKASGCHQXLHQR 707
           P  PGD G H P     RF  H P          N +N      RA  +A+   Q L   
Sbjct: 335 PGVPGDHGDHAPKQTEVRFKVHDPKAHSKGGTLENTING-----RADEEAAPAPQHL--- 386

Query: 708 ISPPRHWAXLXGVSP 752
           I P +    L G++P
Sbjct: 387 IHPGKDINKLYGMTP 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,355
Number of Sequences: 438
Number of extensions: 4186
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)