Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B18
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   0.082
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.42 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.42 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect(2) = 0.082
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 506 GGXPPPPPPP 477
           GG PPPPPPP
Sbjct: 303 GGLPPPPPPP 312



 Score = 22.6 bits (46), Expect(2) = 0.082
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = -2

Query: 497 PPPPPPPXXXXXXXQTPXP 441
           PPPPPP          P P
Sbjct: 309 PPPPPPSNDFWKDSNEPAP 327


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 503 GXPPPPPPPXXXXXXXQTPXP 441
           G PPPPPPP       Q P P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPP 27



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 506 GGXPPPPPPPXXXXXXXQTPXP 441
           G  PPPPPPP         P P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 506 GGXPPPPPPPXXXXXXXQTPXP 441
           GG PPPPPPP         P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +3

Query: 501 PPXXFXXFYKXXPXXXPPPXXXXGGXXXPPPXXXXXXXXXXPP 629
           PP          P   PPP    GG   PPP          PP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 538 PXXPPPPXXGXGGXXXPPP 594
           P  PPPP     G   PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 506 GGXPPPPPPP 477
           G  PPPPPPP
Sbjct: 772 GAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 503 GXPPPPPPP 477
           G PPPPPPP
Sbjct: 774 GPPPPPPPP 782



 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -2

Query: 575 PPXPXXGGGGXXGXXFIKXXKXXGGXPPPPPPP 477
           PP P  GG               G  PPPPPPP
Sbjct: 753 PPAPIMGGPPPPPPP--PGVAGAGPPPPPPPPP 783



 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 536 PXXXPPPXXXGGGGXXPPP 592
           P   PPP    G G  PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 493 PPPPPPXXXKXXXKPP 446
           PPPPPP   +   KPP
Sbjct: 311 PPPPPPPSRRNRGKPP 326



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -2

Query: 575 PPXPXXGGGGXXGXXFIKXXKXXGGXPPPPPPP 477
           PP P        G   I         PPPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,306
Number of Sequences: 5004
Number of extensions: 17383
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)