Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_B17
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 91 2e-19
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.77
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 28 1.8
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 28 1.8
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 27 2.4
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 27 2.4
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 27 2.4
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 26 7.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 9.5
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 91.1 bits (216), Expect = 2e-19
Identities = 39/74 (52%), Positives = 53/74 (71%)
Frame = +1
Query: 388 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRW 567
HP +FF L+FR AI+ YIL +F+ SF+ F+++ LL+ D WTVKN+SGRLLVGLRW
Sbjct: 47 HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRW 106
Query: 568 WNYVDDNGKSHWVF 609
N +G+S W+F
Sbjct: 107 RNETGVDGESIWIF 120
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.1 bits (62), Expect = 0.77
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 188 LNILNYIGIVGNPENSKGHIQSKSLSNIKCII 93
L +L IGI +P+ SK HI+ KSL + C I
Sbjct: 1145 LRMLQKIGISPDPDLSKKHIKLKSLIIVVCSI 1176
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.9 bits (59), Expect = 1.8
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +2
Query: 155 YLLFLYNSIC-LTAVEIIDQ-YLSTYSDTHLKLICEINSIDY**TIQL*IRQRQLCHRSR 328
Y L L +SI +A E+I Y++ +DT +L N + + L + H +R
Sbjct: 537 YFLELPDSIVPSSAFELIRSIYMNHSNDTPYRLRLLQNLLSQLRRVNLATLSAIITHLNR 596
Query: 329 CLMMTPSHLVKRIMLINSLSIPT*CSSTW 415
+ +TP+ I L NSLS+ +TW
Sbjct: 597 LITLTPNKETFTINLANSLSLCISRPATW 625
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 382 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGL 561
FV+P + F L CS ++ ++L G F F+A + I L + N S R
Sbjct: 358 FVYPLVQEFCLFLACSFVVSFLLHGSF---FLAVLSVDIRRLELQDFLDSNSSNR---NS 411
Query: 562 RWW 570
+WW
Sbjct: 412 KWW 414
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 131 CDLSNFQDYLLFLYNSICLTAVEIIDQYLSTYSD 232
CDL + ++LL+L NS +T +D + Y+D
Sbjct: 328 CDLYSLSNFLLYLENSCVITYDVSLDCSFNEYND 361
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 98 YT*YLRVIWIVCDLSNFQDYLLFLYNS 178
Y LR+I+ + D S F+DYL F Y +
Sbjct: 813 YVMILRLIYGIVDQSAFEDYLRFYYGN 839
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 394 YIVFFHLVFRCSAIIVYILCG-----WFSDSFIASFVLVILLLSADFWTVKNIS 540
Y+ F LV +A++V G W S I V +L+L A +W KNI+
Sbjct: 225 YLGSFLLVTGITALVVTFNMGGDAFPWVSPVIITLLVSSVLILFAFYWVEKNIA 278
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 439 VYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWV 606
V+I+ G+ F A L LL +F+ G L W +++ +NGK++W+
Sbjct: 30 VWIIYGYSIGGFFAFLSLFHLL---EFYITARFQGSQL---SWDSFILNNGKAYWL 79
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 382 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVI 498
F+HP+ +FRC + + L + S SF SF+ +
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFL 139
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 513 CRQQ*ND*YEACNE*VGEPPTQDVHNYRRASEHQVEEHYV 394
CR++ Y C++ G P Q NY H ++HY+
Sbjct: 264 CREKHERCY-ICDQVAGRPTHQYFKNYDSLERHFEKDHYI 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,040
Number of Sequences: 5004
Number of extensions: 61579
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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