Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B17
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327...    97   2e-20
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342...    95   8e-20
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    30   1.9  
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    28   7.5  

>01_03_0129 +
           12831947-12832048,12832358-12832414,12832514-12832717,
           12832799-12832858,12835026-12835152,12835801-12835889
          Length = 212

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 38/78 (48%), Positives = 53/78 (67%)
 Frame = +1

Query: 376 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 555
           + + +P   FFH++F+  A+  YIL   F  +F+  FV+ +LL + DFW VKN+SGR+LV
Sbjct: 38  ENYANPKTCFFHVLFKAGALAFYILSALFVTNFVIIFVITVLLAALDFWVVKNVSGRILV 97

Query: 556 GLRWWNYVDDNGKSHWVF 609
           GLRWWN +DD G S W F
Sbjct: 98  GLRWWNEIDDEGNSVWKF 115


>05_01_0432 +
           3428920-3428934,3429007-3429111,3429341-3429397,
           3429499-3429702,3429790-3429849,3430797-3430923,
           3431420-3431520
          Length = 222

 Score = 94.7 bits (225), Expect = 8e-20
 Identities = 36/78 (46%), Positives = 52/78 (66%)
 Frame = +1

Query: 376 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 555
           + + +P    FH++F+  A++ YIL   F  SF+  FV+ + L + DFW VKN+SGR+LV
Sbjct: 44  ENYANPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVKNVSGRILV 103

Query: 556 GLRWWNYVDDNGKSHWVF 609
           G+RWWN +DD G S W F
Sbjct: 104 GMRWWNEIDDEGNSVWKF 121


>03_02_0067 +
           5364713-5364936,5365513-5367016,5367207-5368250,
           5368467-5368577,5368997-5369068,5369719-5369737,
           5369838-5371142,5371317-5371397,5372441-5372604,
           5373363-5373466,5373537-5373628,5374079-5374216,
           5374370-5374426,5374820-5375046
          Length = 1713

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 554 TSNRPLIFLTVQKSADSSRMTNTKLAMNESENHPHRMYTIIAEH 423
           TSN  L+  +V++  D+ R     L  NES +    +Y++I +H
Sbjct: 712 TSNSTLVAKSVERLVDAIRPNLCHLVRNESNSSSEFVYSVIGKH 755


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 125 IVCDLSNFQDYLLFLYNSICLTAVEIIDQYLSTYSDTHLKLICE 256
           I+C+ + F+D LLFLY  + L   E+I  Y   +    L   C+
Sbjct: 696 IICNANAFKDGLLFLYEKLKLFK-EVISCYKQAHDHEGLIACCK 738


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,271,403
Number of Sequences: 37544
Number of extensions: 378583
Number of successful extensions: 782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)