Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B16
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   1.5  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    27   2.7  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    27   4.7  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   4.7  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    26   6.2  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 318 RPQNRRSARTSLSDNAFPRFLLVITPP 398
           RPQ +RS+   LS +AF +F+   +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 363 HCLTKKFGH--FSYFEGEFLFLGTFTAKEIKKRAL 265
           + L    GH   S+  GE  F GT+ A+E K RAL
Sbjct: 319 YMLAASLGHDRSSFLVGEAFFYGTYGARENKLRAL 353


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 697 SXPARXFLGRSPQR*SSLSTPVLRSSGTKPIEQCPVQSYRSXS 825
           S P     G SPQ   SLST ++ +    P E   V S ++ S
Sbjct: 460 SAPTSVLTGTSPQPSPSLSTSIMSTPKLNPSESVVVASEKASS 502


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 509 DLFMEEIVPLVVSAASAIPSLVNAFSSSKPPQTD 610
           D+F  + +P++ ++A  IPSL  A   SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 307 PWNIHGKRNQKARSGKSLDLLARESRKRRRE 215
           PW +  K   K R GK+++ L    R R +E
Sbjct: 286 PWGVLAKGGYKTRRGKNVNKLLVRDRPRGKE 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,086
Number of Sequences: 5004
Number of extensions: 64119
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)