Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B15
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.65 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   1.1  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   2.6  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.6  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   6.0  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   6.0  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 745 LFACLLEPEVIERVVLLVLNRVDSKISATIHSLMSWFTVLVPYNSSSSHWLKNDSCRNYP 566
           + AC L+P++   +  L+ N  +  I+A  H L    T+L    + +S     DS  NY 
Sbjct: 505 VLACRLDPKIDNTISALLENGNNKVINANCHLLRELVTLLPASTAYTSSPYGGDSFYNYV 564

Query: 565 L 563
           L
Sbjct: 565 L 565


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 276  KKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEI 401
            K+K Y  Q   SG   +   SIRK+C N+ +     L H  +
Sbjct: 1717 KQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 742 FACLLE-PEVIERVVLLVLN---RVDSKISATIHSLMSWFTVLVPYNSSSSHW 596
           F C LE PEV+     L ++   R D  +SA     + W T L+   SS SH+
Sbjct: 602 FNCFLELPEVLHGKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHF 654


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 354 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 479
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 4   WIRWTCACLVHLLYSCYVV 60
           WI W CA  + +L+S +V+
Sbjct: 491 WIGWLCALPISVLFSVFVI 509


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
 Frame = -3

Query: 703 VLLVLNRVDSKISATI--------HSLMSWFTVLVPYNSS----SSHWLKNDSCRN---- 572
           VL + N + S + A I        +SL+SW  +   +NS     S+ +L+ D C+N    
Sbjct: 30  VLSLTNSIQSNVGAVISYAVLYFVNSLLSWCMLSSWFNSKLSKLSAGYLQFD-CQNDGKC 88

Query: 571 YPLVMTDPLLRS--KFHLRFALALISCNSLLRVVFPLVNAM 455
           Y ++    L  +   FHL  A  L  CN+  RV   + N +
Sbjct: 89  YSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQNGL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,392,850
Number of Sequences: 5004
Number of extensions: 68454
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)