Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B09
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 475 PPXPPPPPXFXXGG 516
           PP PPPPP    GG
Sbjct: 776 PPPPPPPPAVSAGG 789



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 475 PPXPPPPPXFXXGGG 519
           PP PPPPP     GG
Sbjct: 775 PPPPPPPPPAVSAGG 789


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 474 PPXPPPPPXFFXXGGG 521
           PP PPPPP      GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 474 PPXPPPPPXF 503
           PP PPPPP F
Sbjct: 9   PPPPPPPPGF 18



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 475 PPXPPPPPXF 504
           PP PPPPP F
Sbjct: 9   PPPPPPPPGF 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,528
Number of Sequences: 5004
Number of extensions: 14710
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)