Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_B09
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 27 0.17
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 26 1.4
08_02_1602 - 28148255-28149413,28151927-28152087 31 1.4
08_01_0395 - 3502750-3503033,3504844-3505663 31 1.4
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 30 2.5
01_06_0642 + 30811708-30811768,30812256-30812305,30812455-308129... 30 2.5
04_03_1022 - 21778315-21779007 24 2.5
02_04_0654 - 24755339-24755408,24755488-24755624,24756243-247563... 29 2.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 3.7
07_01_0753 - 5799733-5799741,5799938-5800642 26 4.2
06_03_1191 + 28286685-28287008,28287149-28287211,28287377-282874... 29 4.4
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 29 4.4
12_02_1219 + 27096477-27096590,27096704-27097078 26 5.8
01_03_0005 + 11568545-11569119,11569179-11569191 28 7.7
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 27.1 bits (57), Expect(2) = 0.17
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 381 VXXFXXKXFFXKXXPPPXXXXXFXXKXXXXXPPXPPPPP 497
V F K PPP PP PPPPP
Sbjct: 97 VCLFKKKKRHHHHHPPPPPPPHLLHYYGHPPPPPPPPPP 135
Score = 25.4 bits (53), Expect(2) = 0.17
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 474 PPXPPPPPXF 503
PP PPPPP F
Sbjct: 127 PPPPPPPPPF 136
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 25.8 bits (54), Expect(2) = 1.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 478 PXPPPPPXFXXGGG 519
P PPPPP GGG
Sbjct: 62 PAPPPPPPARSGGG 75
Score = 23.4 bits (48), Expect(2) = 1.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 475 PPXPPPPP 498
PP PPPPP
Sbjct: 49 PPRPPPPP 56
>08_02_1602 - 28148255-28149413,28151927-28152087
Length = 439
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 520 PPPXXKXKGGGGGXGGXXXXXFXKKXXXXXGGG 422
PPP GGGGG GG + + GGG
Sbjct: 50 PPPLLMIPGGGGGGGGGGISPYLVQSQHGHGGG 82
>08_01_0395 - 3502750-3503033,3504844-3505663
Length = 367
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 520 PPPXXKXKGGGGGXGG 473
PPP K +GGGGG GG
Sbjct: 59 PPPGKKSRGGGGGEGG 74
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 520 PPPXXKXKGGGGGXGG 473
PPP KGGGGG GG
Sbjct: 23 PPPPVSKKGGGGGGGG 38
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 520 PPPXXKXKGGGGGXGG 473
PPP K GGGGG GG
Sbjct: 24 PPPVSKKGGGGGGGGG 39
>01_06_0642 +
30811708-30811768,30812256-30812305,30812455-30812926,
30813237-30813596,30813694-30814101,30814383-30814453,
30814553-30814629,30814741-30814888,30815878-30816039,
30816119-30816304
Length = 664
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 477 PXPPPPPXFFXXGGGXXXXXXXFF 548
P PPPPP +F GG FF
Sbjct: 295 PAPPPPPNYFPSSGGSSLTSDAFF 318
>04_03_1022 - 21778315-21779007
Length = 230
Score = 24.2 bits (50), Expect(2) = 2.5
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 424 PPPXXXXFFXXXXXXXXPPXPPPPP 498
PPP PP PPPPP
Sbjct: 19 PPPATRARPPCSSAHLLPPPPPPPP 43
Score = 24.2 bits (50), Expect(2) = 2.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 475 PPXPPPPPXF 504
PP PPPPP +
Sbjct: 38 PPPPPPPPPY 47
>02_04_0654 -
24755339-24755408,24755488-24755624,24756243-24756326,
24756929-24756944,24758035-24758405
Length = 225
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 478 PXPPPPPXFXXGGG 519
P PPPPP F GGG
Sbjct: 62 PMPPPPPPFPKGGG 75
Score = 27.5 bits (58), Expect(2) = 2.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 477 PXPPPPPXFFXXGGG 521
P PPPPP F GGG
Sbjct: 62 PMPPPPPPFPKGGGG 76
Score = 21.0 bits (42), Expect(2) = 2.5
Identities = 9/27 (33%), Positives = 9/27 (33%)
Frame = +3
Query: 423 PPPXXXXXFXXKXXXXXPPXPPPPPXF 503
PPP F PP P P F
Sbjct: 33 PPPPPPPLFPAMSARPQPPRPAHPARF 59
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 423 PPPXXXXXFXXKXXXXXPPXPPPPP 497
PPP K PP PPPPP
Sbjct: 547 PPPPPPPPSGNKPAFSPPPPPPPPP 571
Score = 24.2 bits (50), Expect(2) = 3.7
Identities = 9/24 (37%), Positives = 9/24 (37%)
Frame = +3
Query: 423 PPPXXXXXFXXKXXXXXPPXPPPP 494
PPP PP PPPP
Sbjct: 603 PPPPPPPPILPNRSVPPPPPPPPP 626
Score = 23.4 bits (48), Expect(2) = 3.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 474 PPXPPPPP 497
PP PPPPP
Sbjct: 665 PPPPPPPP 672
>07_01_0753 - 5799733-5799741,5799938-5800642
Length = 237
Score = 25.8 bits (54), Expect(2) = 4.2
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +3
Query: 423 PPPXXXXXFXXKXXXXXPPXPPPPP 497
PPP PP PPPPP
Sbjct: 27 PPPNQPYYAFPAAAYAPPPPPPPPP 51
Score = 21.8 bits (44), Expect(2) = 4.2
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 474 PPXPPPPPXFF 506
PP PPPP F
Sbjct: 48 PPPPPPPTLVF 58
>06_03_1191 +
28286685-28287008,28287149-28287211,28287377-28287461,
28287561-28287623,28287954-28288029,28288190-28288223,
28289553-28289659,28289738-28289807,28289852-28289950
Length = 306
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 424 PPPXXXXFFXXXXXXXXPPXPPPPPXF 504
PPP + PP PPPPP +
Sbjct: 24 PPPPGTSLYASYRHHAYPPHPPPPPAY 50
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 423 PPPXXXXXFXXKXXXXXPPXPPPPPXF 503
PPP + PP PPPPP +
Sbjct: 24 PPPPGTSLYASYRHHAYPPHPPPPPAY 50
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 478 PXPPPPPXFXXGGG 519
P PPPPP F GGG
Sbjct: 11 PPPPPPPPFGRGGG 24
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 475 PPXPPPPPXFXXGGG 519
PP PPPPP GGG
Sbjct: 11 PPPPPPPPFGRGGGG 25
>12_02_1219 + 27096477-27096590,27096704-27097078
Length = 162
Score = 25.8 bits (54), Expect(2) = 5.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 496 GGGGGXGGXXXXXFXKKXXXXXGGG 422
GGGGG GG + ++ GGG
Sbjct: 107 GGGGGYGGGGGGGYGQRREGGYGGG 131
Score = 21.4 bits (43), Expect(2) = 5.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 499 KGGGGGXGG 473
+GGGGG GG
Sbjct: 100 RGGGGGYGG 108
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -3
Query: 520 PPPXXKXKGGGGGXGGXXXXXFXKKXXXXXGGG 422
PPP GGGGG GG GGG
Sbjct: 70 PPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGG 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,575,307
Number of Sequences: 37544
Number of extensions: 259728
Number of successful extensions: 6120
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4321
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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