Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B08
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    44   3e-05
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.053
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.86 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.6  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   8.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 26/94 (27%), Positives = 27/94 (28%), Gaps = 3/94 (3%)
 Frame = +2

Query: 599 PPPPPPPXXXRGG---GGGGGXXXXXPPPPPXXXXXXXXXXXXXXXXXXPPPPXXXXFFF 769
           PPPPPP    RG    G G       PPPPP                  PPPP       
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371

Query: 770 XXPPPPPXKKKKXXGGGGXPPXXXXXXXXXXXPP 871
               PPP    +       PP           PP
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405



 Score = 30.3 bits (65), Expect = 0.37
 Identities = 24/97 (24%), Positives = 26/97 (26%)
 Frame = +2

Query: 500 PPPPPXXKKXXXXXGGXXGGXXPPXXKXXXGXXPPPPPPPXXXRGGGGGGGXXXXXPPPP 679
           PPPPP  ++             PP          PPPPPP      G         P PP
Sbjct: 312 PPPPPPSRRNRGK---------PPIGNGSSNSSLPPPPPPPRSNAAGS-------IPLPP 355

Query: 680 PXXXXXXXXXXXXXXXXXXPPPPXXXXFFFXXPPPPP 790
                               PPP         PP PP
Sbjct: 356 QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/78 (25%), Positives = 21/78 (26%)
 Frame = +2

Query: 599 PPPPPPPXXXRGGGGGGGXXXXXPPPPPXXXXXXXXXXXXXXXXXXPPPPXXXXFFFXXP 778
           PP PPP                 PPPPP                   PP          P
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPP------------SRRNRGKPPIGNGSSNSSLP 337

Query: 779 PPPPXKKKKXXGGGGXPP 832
           PPPP  +    G    PP
Sbjct: 338 PPPPPPRSNAAGSIPLPP 355



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 678 GGGGXXXXXPPPPPPPLXXXGG 613
           G G      PPPPPPP     G
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAG 349


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +2

Query: 500 PPPPPXXKKXXXXXGGXXGGXXPPXXKXXXGXXPPPPPPPXXXRGG 637
           P P P          G      PP      G  PPPPPPP    GG
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 554 GGXXPPXXKXXXGXXPPPPPPPXXXRGGGG 643
           G   PP      G  PPPPPPP      GG
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 30.3 bits (65), Expect = 0.37
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 554 GGXXPPXXKXXXGXXPPPPPPPXXXRGGGGGGGXXXXXPPPPP 682
           GG  PP          PPPPPP       GG       P   P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 29.1 bits (62), Expect = 0.86
 Identities = 18/59 (30%), Positives = 18/59 (30%)
 Frame = -1

Query: 653 PPPPPPPPXXXXXXXXXXXXPPXXXFXXGGXXPXXPXXXXXXXFFXGGGGGGXXXPPPP 477
           PPPPPP              PP      G   P  P          G  G G   PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP---------PGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 651 PPPPPPPLXXXGGGGGGGXXPXXXFXXGG 565
           PPPPPPP    G G      P      GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = -2

Query: 649 PPPPPPPXXXXXXXXXXXXPPXXFXXXGGXPPXXP 545
           PPPPPP              P      GG PP  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -1

Query: 650 PPPPPPPXXXXXXXXXXXXPPXXXFXXGG 564
           PPPPPPP            PP      GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 670 GXXXXXPPPPPPPP 629
           G     PPPPPPPP
Sbjct: 769 GVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/64 (29%), Positives = 19/64 (29%)
 Frame = +2

Query: 599 PPPPPPPXXXRGGGGGGGXXXXXPPPPPXXXXXXXXXXXXXXXXXXPPPPXXXXFFFXXP 778
           PPPPPP                 PPP P                  PPPP         P
Sbjct: 732 PPPPPPAVIVPTPAPA---PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP---------P 779

Query: 779 PPPP 790
           PPPP
Sbjct: 780 PPPP 783



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 737 PPPPXXXXFFFXXPPPPPXKKKKXXGGG 820
           PPPP         PPPPP        GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 677 GGGGXXXXPPPPPPP 633
           G  G    PPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 651 PPPPPPPLXXXGGG 610
           PPPPPPPL    GG
Sbjct: 947 PPPPPPPLVSAAGG 960



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 670 GXXXXXPPPPPPPP 629
           G     PPPPPPPP
Sbjct: 939 GVMPAFPPPPPPPP 952



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 599 PPPPPPPXXXRGGGG 643
           PPPPPPP      GG
Sbjct: 946 PPPPPPPPLVSAAGG 960



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 599 PPPPPPPXXXRGGGGG 646
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = -3

Query: 651 PPPPPPPLXXXGGGGGGGXXPXXXFXXGGXXPPXXPP 541
           PPPPPPP             P   +  G    P  PP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPP 225


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 590 GXXPPPPPPPXXXRGGGGGGGXXXXXPPPPP 682
           G  PPPPPPP         G      PPPPP
Sbjct: 7   GNPPPPPPPP---------GFEPPSQPPPPP 28



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 653 PPPPPPPPXXXXXXXXXXXXPP 588
           PPPPPPPP            PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 680 GGGGGXXXXPPPPPPPP 630
           G        PPPPPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 683 GGGGGGXXXXPPPPPPP 633
           G    G    PPPPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 634 GGGGGGGXXXXPPPPPP 684
           G    GG    PPPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314



 Score = 23.0 bits (47), Expect(2) = 10.0
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 633 GGGGGGGXXXXXPPPPP 683
           G    GG     PPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314



 Score = 20.6 bits (41), Expect(2) = 10.0
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +3

Query: 735 PPPPXXXXXFFFXXPPPPPXKKKXXXG 815
           PPPP     F+     P P   K   G
Sbjct: 309 PPPPPPSNDFWKDSNEPAPADNKGDMG 335


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 652  PPPPPPPP 629
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 652 PPPPPPPP 629
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 681 GGGGGXXXXXPPPPPPPLXXXGGGGGGG 598
           GG GG       PPP P    G GG GG
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGG 215



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 678 GGGGXXXXXPPPPPPPLXXXGGGGGGG 598
           GG G     PPP P      GG GG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEG 217


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 599  PPPPPPPXXXRGGGGGGGXXXXXPPPPP 682
            PPPPPP    + G          PP  P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGP 1909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,464
Number of Sequences: 5004
Number of extensions: 41516
Number of successful extensions: 591
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)