Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B07
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   2.6  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   3.4  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   7.9  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 135 FGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNPV 1
           FG+++ V    A + RL+   H  +    +   CV+T + H  PV
Sbjct: 471 FGHIEGVWEIAADHLRLISGAHDGVVKVWEACECVHTLKNHSEPV 515


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 544 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIXMFSTHRDCESTAY 678
           Y+C  +  +S G L  SED ++ W    K GLI  F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 717 WHXLLKTLYXKGSIGRAFAVPMRTEH 640
           +H + + L   GSI   FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 661  SPYAY*TXGSSQLLPFCSTRGF 596
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,762
Number of Sequences: 5004
Number of extensions: 70356
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)