Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B04
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834...    30   2.1  
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442...    30   2.1  
04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503...    30   2.8  
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    29   4.9  
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15...    29   6.5  
06_02_0363 - 15172528-15173224,15174564-15174856                       29   6.5  
03_05_0431 + 24221881-24224586                                         29   6.5  

>12_02_0667 +
           21682386-21682944,21683042-21683201,21683419-21683467,
           21683570-21683683,21683794-21684294,21684594-21684980,
           21685074-21685172,21685380-21685478,21685817-21685890,
           21686387-21687023
          Length = 892

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 364 AKESDGTNGGGVCAPTTEW---DARSDVRRATPFEE 266
           ++E  G  GGG   P  ++   D+RS  RR+T F+E
Sbjct: 3   SREESGNGGGGGATPAADYRSSDSRSSSRRSTRFKE 38


>10_08_0106 +
           14842748-14843085,14843122-14843250,14844145-14844211,
           14847177-14847324,14847998-14848097,14848306-14848384,
           14848527-14848687,14848829-14848908,14849319-14849475,
           14849575-14849723,14849909-14850076,14850426-14850719,
           14851002-14851046,14851213-14851462,14851707-14851835,
           14852799-14853039,14853977-14854642
          Length = 1066

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 175 SSATPDRSSHPGTVVPEVANRYQPHEKRSGALQKGSPSEHHFEHPTP 315
           SS   DRS+ P    P+  +R  PH + SG+ +K S S+ + + P P
Sbjct: 849 SSQPADRSAPPPPASPDRHSRRSPH-RSSGSGKKRSSSDRYDDLPLP 894


>04_04_1541 +
           34249778-34249882,34249964-34250115,34250225-34250350,
           34251868-34252030,34252601-34252678,34252749-34252847,
           34253045-34253188,34253344-34253446,34255303-34255646,
           34255727-34255891
          Length = 492

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 680 IPKEPKALRRLSCRIVIE*PEG 615
           +P+EPK  R L CR+ I  P+G
Sbjct: 403 LPEEPKGSRELLCRVAIRLPDG 424


>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +2

Query: 149 YSCRKMSLLHRRLQIA----VATLGQWFRKWRIDINPTKSAAVLFKRGR 283
           +S     L+HR L  A    VA   +  R WR  + P + AA L  RGR
Sbjct: 89  FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137


>11_01_0022 +
           151233-151515,152632-152852,153579-153656,154558-154674,
           155970-156316,156504-157032
          Length = 524

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 625 NLKGFQVGAGCVSEHYACVR 566
           N   +QVG GC+S+ Y C+R
Sbjct: 348 NATNYQVGTGCLSDIYFCLR 367


>06_02_0363 - 15172528-15173224,15174564-15174856
          Length = 329

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 761 PXSQNGAAMPTVDTY*ESRAPXRREIHIPKEPKALRR 651
           P +  GA+ P++        P  RE+ +P+ P ALRR
Sbjct: 246 PATDLGASPPSLSGRSAPTPPQARELRLPRRPGALRR 282


>03_05_0431 + 24221881-24224586
          Length = 901

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 462 ARSRTVFIWG-RNVIPLSRVTPRYLTFETHGMG 367
           AR+RTVF WG  +V  +  + PR + F++ G G
Sbjct: 175 ARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAG 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,056,270
Number of Sequences: 37544
Number of extensions: 542107
Number of successful extensions: 1396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)