Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_B04
(877 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha prot... 34 0.59
CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein. 34 0.59
BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directe... 34 0.59
BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directe... 34 0.59
AF103198-1|AAD30758.1| 129|Homo sapiens immunoglobulin heavy ch... 32 3.1
BC050629-1|AAH50629.1| 561|Homo sapiens cytoplasmic polyadenyla... 30 9.6
BC035348-1|AAH35348.1| 486|Homo sapiens cytoplasmic polyadenyla... 30 9.6
AK023265-1|BAB14496.1| 486|Homo sapiens protein ( Homo sapiens ... 30 9.6
AF329403-1|AAK01240.1| 491|Homo sapiens cytoplasmic polyadenyla... 30 9.6
AF329402-1|AAK01239.1| 566|Homo sapiens cytoplasmic polyadenyla... 30 9.6
>L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha
protein.
Length = 598
Score = 34.3 bits (75), Expect = 0.59
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 520 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 630
P G+ + + TP + KRSV +RSPH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein.
Length = 598
Score = 34.3 bits (75), Expect = 0.59
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 520 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 630
P G+ + + TP + KRSV +RSPH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 34.3 bits (75), Expect = 0.59
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 520 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 630
P G+ + + TP + KRSV +RSPH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 34.3 bits (75), Expect = 0.59
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 520 PQ*GNSLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYS 630
P G+ + + TP + KRSV +RSPH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>AF103198-1|AAD30758.1| 129|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 129
Score = 31.9 bits (69), Expect = 3.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 119 ALFADDTAIYYSCRKMSLLHRRLQIAVATLGQW 217
+L A+DTA+YY ++MS++ +I V G W
Sbjct: 77 SLRAEDTALYYCAKEMSVVEGYEEIVVLPTGNW 109
>BC050629-1|AAH50629.1| 561|Homo sapiens cytoplasmic
polyadenylation element binding protein 1 protein.
Length = 561
Score = 30.3 bits (65), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 686 SHDXLELDSLSKYLQSASLRHFEXXXRHEXPLIVAAGNYIPXPVNRM 826
SHD L D LS+Y S R P ++A N++ P R+
Sbjct: 375 SHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRL 421
>BC035348-1|AAH35348.1| 486|Homo sapiens cytoplasmic
polyadenylation element binding protein 1 protein.
Length = 486
Score = 30.3 bits (65), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 686 SHDXLELDSLSKYLQSASLRHFEXXXRHEXPLIVAAGNYIPXPVNRM 826
SHD L D LS+Y S R P ++A N++ P R+
Sbjct: 300 SHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRL 346
>AK023265-1|BAB14496.1| 486|Homo sapiens protein ( Homo sapiens
cDNA FLJ13203 fis, clone NT2RP3004504, highly similar to
M.musculus mRNA for CPEB protein. ).
Length = 486
Score = 30.3 bits (65), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 686 SHDXLELDSLSKYLQSASLRHFEXXXRHEXPLIVAAGNYIPXPVNRM 826
SHD L D LS+Y S R P ++A N++ P R+
Sbjct: 300 SHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRL 346
>AF329403-1|AAK01240.1| 491|Homo sapiens cytoplasmic
polyadenylation element-binding protein short form
protein.
Length = 491
Score = 30.3 bits (65), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 686 SHDXLELDSLSKYLQSASLRHFEXXXRHEXPLIVAAGNYIPXPVNRM 826
SHD L D LS+Y S R P ++A N++ P R+
Sbjct: 305 SHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRL 351
>AF329402-1|AAK01239.1| 566|Homo sapiens cytoplasmic
polyadenylation element-binding protein long form
protein.
Length = 566
Score = 30.3 bits (65), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 686 SHDXLELDSLSKYLQSASLRHFEXXXRHEXPLIVAAGNYIPXPVNRM 826
SHD L D LS+Y S R P ++A N++ P R+
Sbjct: 380 SHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRL 426
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,069,443
Number of Sequences: 237096
Number of extensions: 2814619
Number of successful extensions: 17535
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17535
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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