Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_B04
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 58 6e-09
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 54 2e-07
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 45 8e-05
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 43 3e-04
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 43 3e-04
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 58.4 bits (135), Expect = 6e-09
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 1/208 (0%)
Frame = +2
Query: 26 TAGVPQGSALSPXII*FVYQXIYPGSPE-THLALFADDTAIYYSCRKMSLLHRRLQIAVA 202
T GVPQG+ LSP + I PE FADDT +Y S K LQ A+
Sbjct: 74 TCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTES-ENNLQSALD 132
Query: 203 TLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWV 382
+ W + ++ +N +K T + + RR + L G PI
Sbjct: 133 AVVDWTKGSKLTLNQSK--------------TVHVTVGKRRIDFK----YHLDGYPIERK 174
Query: 383 SKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPV 562
+ + LG + + F H + + A F L ++ + +K + + LYKT IRP
Sbjct: 175 AITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---ILLYKTFIRPR 231
Query: 563 MTYASVVFAHAARTHLKSLQVIQSRFCR 646
+ Y +VV + ++ K+++ +Q+ F R
Sbjct: 232 LEYGTVVSSPTKKSDEKTIESVQNAFTR 259
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 53.6 bits (123), Expect = 2e-07
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 1/190 (0%)
Frame = +2
Query: 23 LTAGVPQGSALSPXI-I*FVYQXIYPGSPETHLALFADDTAIYYSCRKMSLLHRRLQIAV 199
+++GVPQGS P + I F+ + +P +++ FADD I+++ +++ + I V
Sbjct: 877 ISSGVPQGSVSGPLLFILFINNLLIDLAPTINISCFADDVKIFHT--DPTIIQNSIDIIV 934
Query: 200 ATLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPW 379
+ W + + + PTKSA + L +R N S ++ G PI
Sbjct: 935 S----WSKLNELPLAPTKSAL--------------LALGTRNKNQS----YSVDGVPITP 972
Query: 380 VSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 559
S V+ LG+ D + F HI V + + R +L + S S + LYKT + P
Sbjct: 973 SSTVRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAP 1029
Query: 560 VMTYASVVFA 589
+M Y S V+A
Sbjct: 1030 IMNYCSEVYA 1039
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 44.8 bits (101), Expect = 8e-05
Identities = 36/140 (25%), Positives = 62/140 (44%)
Frame = +2
Query: 23 LTAGVPQGSALSPXII*FVYQXIYPGSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVA 202
L GVPQGS +SP + F Y P +T L +ADD +I +K+ ++Q+ +
Sbjct: 529 LLGGVPQGSVISPNLFTF-YLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHID 587
Query: 203 TLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWV 382
+ ++ ++ + I+ KS +F S P + I PIP +
Sbjct: 588 EIAKYLKERGMSISAEKSTVTVF---------SCDPKEHK-----TKPDIYWMDDPIPVI 633
Query: 383 SKVKYLGVTLDRGMTFRPHI 442
+ K LG+TL+ + H+
Sbjct: 634 NAPKLLGITLNTMTGTKDHV 653
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/97 (27%), Positives = 48/97 (49%)
Frame = +2
Query: 356 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 535
L G PI + + LG + + F H K + A F L ++ + +K + +
Sbjct: 136 LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---IL 192
Query: 536 LYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 646
LYKT IRP + Y +VV + ++ K+++ +Q+ F R
Sbjct: 193 LYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 42.7 bits (96), Expect = 3e-04
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 27/226 (11%)
Frame = +2
Query: 23 LTAGVPQGSALSPXI-I*FVYQXIYPGSPETHLALFADDTAIYYSCRKMSLLHRRLQIAV 199
+++GVP+GS P + + F+ + P + FADD +Y + +Q +
Sbjct: 53 ISSGVPKGSVSGPFLFLIFINSLLLSVPPSISCSAFADDLKVYSHSPPL------IQTTI 106
Query: 200 ATLGQWFRKWRIDINPTKSAAVLFKRGRPPN-------ITSSIPLRSRRANTSAVS---- 346
+ W ++ + K AA+L K G N + +S+ R A+ + VS
Sbjct: 107 DLITTWSENNKLPLAVHK-AALLNKLGFSSNCVLLLAPLINSLVCRLLAASRTGVSTVAH 165
Query: 347 ------------PITLF---GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGR 481
P T++ PI + + LG+ D +TF+PHIK + + L R
Sbjct: 166 SKTCLLHLGKKNPKTVYKINNLPISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLR 222
Query: 482 LYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTHLKSL 619
+L S L L+KT I P++ Y S V++ + L +L
Sbjct: 223 CKQLLKSFKSLCPEFYCNLFKTYILPLIEYGSAVYSPKPSSSLSTL 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,906,812
Number of Sequences: 27780
Number of extensions: 400289
Number of successful extensions: 888
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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