Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_B03
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 30 2.8
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.6
03_02_0072 + 5435744-5436031,5436159-5436326,5436555-5436671 29 3.6
10_08_0187 + 15592130-15592512,15592597-15592972 29 6.4
08_02_0813 + 21459776-21461128 28 8.4
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.4
03_02_0488 - 8824980-8825267,8825364-8827775 28 8.4
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.4
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 8.4
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 363 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 515
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 394 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFTLRSNSVVCRSNS 245
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 222 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 133
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>03_02_0072 + 5435744-5436031,5436159-5436326,5436555-5436671
Length = 190
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 503 FGSRMHNSDEMDFVIDKRXYSMFESGAWDVTDLSSAVHSQDRGEV 637
FG ++ N +D+ +S + WDV L S+VH G++
Sbjct: 93 FGVKVWNHSCDQDTVDREIFSERRNDLWDVAQLDSSVHYNQLGKL 137
>10_08_0187 + 15592130-15592512,15592597-15592972
Length = 252
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 261 TTELERRVNGAAALGWCPRNACGGLTWYC 347
+T ER V GAAA G C RN G W C
Sbjct: 125 STTSERDVTGAAAAGRCSRN--DGKRWRC 151
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 278 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 457
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 458 QL 463
+L
Sbjct: 289 EL 290
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 94 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 249
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.3 bits (60), Expect = 8.4
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Frame = -1
Query: 380 RSP-RRWLQPRLAVPRQASTSVPRTPA---KCCSPIH---PAFQLSRLSIQFI*RSASIR 222
RSP RR L P L PRQ+STS P P+ KC P H + L ++Q + R +
Sbjct: 461 RSPLRRMLDPILK-PRQSSTSGPIQPSFVPKCHLPGHIDKQSLSLGGSALQNVQRRSVDS 519
Query: 221 TVDSDSR 201
V+S+ R
Sbjct: 520 VVNSNCR 526
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 392 GRGERSPRRWLQPRLAVPRQASTSVPRTP 306
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 275 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 454
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 455 MQLDN 469
LDN
Sbjct: 188 --LDN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,168,080
Number of Sequences: 37544
Number of extensions: 500266
Number of successful extensions: 1464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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