Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_B02
(1103 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 39 0.001
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.023
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 33 0.024
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.041
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.29
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 28 0.33
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.87
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.87
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 1.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 6.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 817 PPPPPPPPXXXXGGG--GGGGGXXXXXPPPPPPR 912
PPPPPPP G G G PPPPPPR
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344
Score = 36.3 bits (80), Expect = 0.008
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +2
Query: 815 PPPPPPPPPXXXXGGGGGGGXXXXXXPPPPPP 910
PPPPPPP G G PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 31.9 bits (69), Expect = 0.16
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +1
Query: 772 GXPXXXKKKKXXXXPPPPPPPPPXXXXGGGGGGGGXXXXXPPPPPPR 912
G P PP PPPPP G PPPPPPR
Sbjct: 323 GKPPIGNGSSNSSLPP--PPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +1
Query: 823 PPPPPPXXXXGGGGGGGGXXXXXPPPPPPR 912
PP PPP PPPPP R
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSR 319
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 828 PPPPPXXXXGGGGGGGXXXXXXPPPPPPP 914
PPPPP G PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 901 GGGXXXXXXPPPPPPPXXXXGG 836
G G PPPPPPP G
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAG 349
Score = 26.2 bits (55), Expect = 8.1
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +2
Query: 770 GXPXXXXKKKKXXXXPPPPPPPPPXXXXGGGGGGGXXXXXXPPPPPP 910
G P P PPPPP G PPPPPP
Sbjct: 323 GKPPIGNGSSNSSLPP---PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 899 GGGXXXXXPPPPPPPPXXXXGG 834
G G PPPPPPP G
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAG 349
Score = 23.8 bits (49), Expect(2) = 3.6
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -1
Query: 905 GGGGGXXXXXPPPPPP 858
G G PPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343
Score = 21.8 bits (44), Expect(2) = 3.6
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -1
Query: 869 PPPPPPXXXXGGG 831
PPPPPP G
Sbjct: 337 PPPPPPPRSNAAG 349
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.023
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 768 GGXPXXXXKKKXXXXXPPPPPPPPPXXXXGG 860
GG P PPPPPPPPP GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 33.5 bits (73), Expect = 0.054
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +1
Query: 817 PPPPPPPPXXXXGGGGGGGGXXXXXPPPP 903
PPPPPPPP G G G PPPP
Sbjct: 761 PPPPPPPP------GVAGAGPPPPPPPPP 783
Score = 32.7 bits (71), Expect = 0.094
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +1
Query: 823 PPPPPPXXXXGGGGGGGGXXXXXPPPPPPRP 915
PPPPPP G G PPPPPP P
Sbjct: 761 PPPPPPPPGVAGAG--------PPPPPPPPP 783
Score = 31.5 bits (68), Expect = 0.22
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 769 GGXPXXXKKKKXXXXPPPPPPPPPXXXXGGG 861
GG P PPPPPPPP GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 31.1 bits (67), Expect = 0.29
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Frame = +1
Query: 814 PPPPPPPPPXXXXGG---GGGGGGXXXXXPPPPPPRP 915
P P P PPP GG G PPPPPP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 30.3 bits (65), Expect = 0.50
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 893 GXXXXXPPPPPPPPXXXXGGG 831
G PPPPPPPP GG
Sbjct: 769 GVAGAGPPPPPPPPPAVSAGG 789
Score = 27.5 bits (58), Expect = 3.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 875 PPPPPPPPXXXXGG 834
PPPPPPPP G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Frame = +3
Query: 816 PPPP------PPPPPXXXXGGGGGGGXXXXXXPPPPPPP 914
PPPP PPPPP GG P P P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.1 bits (57), Expect(2) = 0.72
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 872 PPPPPPPXXXXGGG 831
PPPPPPP G G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Frame = +1
Query: 814 PPPPP------PPPPXXXXGGGGGGGGXXXXXPPPPPPRP 915
PPPPP PPPP GG P P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.1 bits (57), Expect(2) = 0.25
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 872 PPPPPPPXXXXGGGG 828
PPPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 24.2 bits (50), Expect(2) = 4.3
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 869 PPPPPPXXXXGGGG 828
PPPPPP G G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 22.6 bits (46), Expect(2) = 0.25
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -1
Query: 902 GGGGXXXXXPPPPPP 858
G G PPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783
Score = 21.0 bits (42), Expect(2) = 0.72
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 875 PPPPPP 858
PPPPPP
Sbjct: 732 PPPPPP 737
Score = 21.0 bits (42), Expect(2) = 4.3
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 872 PPPPPP 855
PPPPPP
Sbjct: 732 PPPPPP 737
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 32.7 bits (71), Expect = 0.094
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 816 PPPPPPPPPXXXXGGG 863
PPPPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 30.3 bits (65), Expect = 0.50
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 893 GXXXXXPPPPPPPPXXXXGGGG 828
G PPPPPPPP GG
Sbjct: 939 GVMPAFPPPPPPPPPLVSAAGG 960
Score = 29.9 bits (64), Expect(2) = 0.024
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 817 PPPPPPPPXXXXGGGG 864
PPPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 27.1 bits (57), Expect = 4.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 872 PPPPPPPXXXXGGGGG 825
PPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 27.1 bits (57), Expect = 4.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 820 PPPPPPPXXXXGGGGG 867
PPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 23.8 bits (49), Expect(2) = 1.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 894 PPPPPPP 914
PPPPPPP
Sbjct: 945 PPPPPPP 951
Score = 23.4 bits (48), Expect(2) = 0.024
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 814 PPPPPPPP 837
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 23.4 bits (48), Expect(2) = 1.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 819 PPPPPPPP 842
P PPPPPP
Sbjct: 905 PTPPPPPP 912
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.9 bits (74), Expect = 0.041
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = +3
Query: 816 PPPPPPPPPXXXXGGGGGGGXXXXXXPPPPPPP 914
PPPPPPPP G PPPPPPP
Sbjct: 9 PPPPPPPP-----------GFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 814 PPPPPPPPPXXXXGGGGGGGGXXXXXPPPPPP 909
PP PPPPP G PPPPPP
Sbjct: 5 PPGNPPPPPPPP-------GFEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 875 PPPPPPPP 852
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.29
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 914 GRGGGGGGXXXXXPPPPPPPPXXXXGGGGGGGGG 813
G GGG G PPP P G GG GG G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 911 RGGGGGGXXXXXPPPPPPPPXXXXGGGGGGGGG 813
RG GGG PPP GG GG GG
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 778 PXXXKKKKXXXXPPPPPPPP 837
P K PPPPPPPP
Sbjct: 1083 PVANNVSKPSAVPPPPPPPP 1102
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 875 PPPPPPPP 852
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect(2) = 0.33
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 818 PPPPPPPP 841
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 22.6 bits (46), Expect(2) = 0.33
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 893 PPPPPPA 913
PPPPPPA
Sbjct: 1097 PPPPPPA 1103
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.87
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 814 PPPPPPPPP 840
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 875 PPPPPPPP 852
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 875 PPPPPPPP 852
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.87
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 816 PPPPPPPPP 842
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 778 PXXXKKKKXXXXPPPPPPPPP 840
P K+ P PPPPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPP 244
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 875 PPPPPPPP 852
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 875 PPPPPPPP 852
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 818 PPPPPPPPXXXXGGGGGGGXXXXXXPPPPPPA 913
PPP PP PPPPPPA
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPPA 198
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 824 PPPPPPXXXXGGGGGGGXXXXXXPPPPPPA 913
PPPPPP G PP PPA
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPA 1911
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 875 PPPPPPPP 852
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 815 PPPPPPPP 838
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 817 PPPPPPPP 840
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,598
Number of Sequences: 5004
Number of extensions: 48557
Number of successful extensions: 946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 583709326
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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