Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_B02
         (1103 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.045
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   2.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 875  PPPPPPPP 852
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect(2) = 0.045
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 815  PPPPPPPP 838
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.39
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 818  PPPPPPPP 841
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 894  PPPPPPP 914
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 894  PPPPPPP 914
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 21.4 bits (43), Expect(2) = 0.045
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 893  PPPPPPA 913
            PPPPPP+
Sbjct: 1357 PPPPPPS 1363


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +1

Query: 814 PPPPPPPPPXXXXGGGGGGGGXXXXXPPPPPPRP 915
           P P PP P          G       P P PP P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 140



 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +1

Query: 814 PPPPPPPPPXXXXGGGGGGGGXXXXXPPPPPPRP 915
           P P PP P          G       P P PP P
Sbjct: 133 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 815 PPPPPPPPPXXXXGG 859
           PP P PPPP     G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 875 PPPPPPPP 852
           P PPPPPP
Sbjct: 341 PAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 875  PPPPPPPP 852
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 816  PPPPPPPP 839
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 819  PPPPPPPP 842
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.0 bits (47), Expect = 4.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 892  PPPPPPR 912
            PPPPPPR
Sbjct: 1859 PPPPPPR 1865


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 349 KKKKKXXFFXKXXWAKKGFL 290
           K K    FF +  W++KGFL
Sbjct: 144 KAKFPQEFFPECKWSRKGFL 163


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 453 PPXGGXPPXPPEEKXS 406
           PP GG P  PP +  S
Sbjct: 46  PPPGGPPGAPPSQNPS 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,141
Number of Sequences: 438
Number of extensions: 9056
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37114308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)