Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_A05
(927 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 42 1e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 42 1e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 40 4e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 40 4e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 6e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 39 6e-05
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 37 2e-04
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 31 0.011
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 28 0.14
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 3.9
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 9.1
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.5 bits (93), Expect = 1e-05
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 109 STRSSQRTIGSLPPDSKIVVNLTLHLRHANIRESESTVRILADLXMNWIDKRLSWNAGEW 288
S + +R + + ++ +TL + ++ E + A L + W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 289 -GCSTWLVSSERLWRPDVVLLNAA 357
G ++ +LW+PD+++ N+A
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 41.5 bits (93), Expect = 1e-05
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 109 STRSSQRTIGSLPPDSKIVVNLTLHLRHANIRESESTVRILADLXMNWIDKRLSWNAGEW 288
S + +R + + ++ +TL + ++ E + A L + W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 289 -GCSTWLVSSERLWRPDVVLLNAA 357
G ++ +LW+PD+++ N+A
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSA 147
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 196 NIRESESTVRILADLXMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 357
++ E + A L + W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 196 NIRESESTVRILADLXMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 357
++ E + A L + W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 196 NIRESESTVRILADLXMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 357
++ E + A L + W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 196 NIRESESTVRILADLXMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 357
++ E + A L + W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 196 NIRESESTVRILADLXMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 357
++ E + A L + W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 196 NIRESESTVRILADLXMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 357
++ E + A L + W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.9 bits (89), Expect = 3e-05
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 157 KIVVNLTLHLRHANIRESESTVRILADLXMNWIDKRLSWNAGEWGCSTWL-VSSERLWRP 333
KI + L+ L N++ T + + +W D +L W+ E+G L V S+ +WRP
Sbjct: 53 KIKLKLS-QLIDVNLKNQIMTTNLWVE--QSWYDYKLKWDPKEYGGVEMLHVPSDHIWRP 109
Query: 334 DVVLLNAA 357
D+VL N A
Sbjct: 110 DIVLYNNA 117
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 39.5 bits (88), Expect = 4e-05
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +1
Query: 157 KIVVNLTL-HLRHANIRESESTVRILADLXMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 330
K+ VN L ++ N+ E ++ L W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 331 PDVVLLNAAATTAGDYALRRPAXLXXXPXSXI 426
PD+VL N A G+Y +R + + P +
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDV 139
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.5 bits (88), Expect = 4e-05
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 157 KIVVNLTL-HLRHANIRESESTVRILADLXMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 330
++ + L L L N++ T + + +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLWVE--QSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 331 PDVVLLNAA 357
PD+VL N A
Sbjct: 113 PDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.5 bits (88), Expect = 4e-05
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 157 KIVVNLTL-HLRHANIRESESTVRILADLXMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 330
++ + L L L N++ T + + +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLWVE--QSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 331 PDVVLLNAA 357
PD+VL N A
Sbjct: 113 PDIVLYNNA 121
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 39.5 bits (88), Expect = 4e-05
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +1
Query: 127 RTIGSLPPDSKIVVNLTL-HLRHANIRESESTVRILADLXMNWIDKRLSWNAGEWG-CST 300
R +G+ + + L L L N++ T + + W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVE--QEWNDYKLKWNPDDYGGVDT 94
Query: 301 WLVSSERLWRPDVVLLNAA 357
V SE +W PD+VL N A
Sbjct: 95 LHVPSEHIWLPDIVLYNNA 113
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 39.5 bits (88), Expect = 4e-05
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 160 IVVNLTLHLRHA---NIRESESTVRILADLXMNWIDKRLSWNAGEWGCSTWL-VSSERLW 327
+VV L L L N+++ T + L W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 328 RPDVVLLNAA 357
PD+VL N A
Sbjct: 104 LPDIVLYNNA 113
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.1 bits (87), Expect = 6e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 160 IVVNLTLHLRHANIRESESTVRILADLXMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 336
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 337 VVLLNAA 357
+L N A
Sbjct: 92 TILYNNA 98
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 39.1 bits (87), Expect = 6e-05
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 196 NIRESESTVRILADLXMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 357
N++ T + + W D +L WN E+G L V SE +W PD+VL N A
Sbjct: 74 NLKNQVMTTNVWVE--QRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 37.1 bits (82), Expect = 2e-04
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 124 QRTIGSLPPDSKIVVNLTLHLRHANIRESESTVRILADLXMNWIDKRLSWNAGEWGCSTW 303
+R +G+ + LTL ++ ++ E + L + W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 304 L-VSSERLWRPDVVLLNAA 357
L + RLW+PDV++ N+A
Sbjct: 98 LRIPPHRLWKPDVLMYNSA 116
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.7 bits (81), Expect = 3e-04
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 166 VNLTLHLRHANIRESESTVRILADLXMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 342
++ L ++H N+ E TV L + W L+W + E+ ++ V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 343 L 345
+
Sbjct: 122 M 122
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 31.5 bits (68), Expect = 0.011
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 199 IRESESTVRILADLXMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 351
I E + T + +W+D+RL++ G+ + + R+W+PD N
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 27.9 bits (59), Expect = 0.14
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 247 NWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 351
+W D RLS+ S + ER+WRPD N
Sbjct: 92 SWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 3.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 101 GQ*CCVFAFCRTSYSTSEEKPVTRII 24
G+ CC F T Y + K VT+ I
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQCI 627
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 9.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 303 PSAAAPFPCVPTQS 262
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,945
Number of Sequences: 438
Number of extensions: 3089
Number of successful extensions: 41
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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