Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P24
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    64   2e-11
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   5.5  

>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 33/70 (47%), Positives = 46/70 (65%)
 Frame = -3

Query: 456 LRQKIAILCXMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHIDQV 277
           L QKI ++  +E+ F    +QR L+F+ IAR  RIP +EVELLIM+AL+  LI G ID+V
Sbjct: 273 LGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEV 332

Query: 276 RSCATVQWVR 247
               T+  V+
Sbjct: 333 TQIVTISSVQ 342



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 553 ELVKAVSVGDXGAFERIRAKIQLRRITQSRQA 458
           +LV A++VGD   FER+  +I    + QS  A
Sbjct: 240 DLVIAMNVGDLPLFERLMGQINKMPLLQSSVA 271


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 396  QRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHI 286
            +  LS + + +E  + +DE+E+     L E+L  GH+
Sbjct: 976  EEALSIQLLQKETMLRIDELEIERNNTLLERLAIGHV 1012


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,473
Number of Sequences: 5004
Number of extensions: 32040
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)