Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P24
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596...    74   2e-13
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971...    73   4e-13
01_01_1222 + 9877607-9877691,9879235-9879390,9880070-9880148,988...    29   3.3  
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852...    29   5.8  
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    28   7.6  

>03_02_0154 +
           5967512-5967658,5968206-5968652,5968766-5968846,
           5969058-5969075,5969552-5969748,5969844-5969943,
           5970676-5970861
          Length = 391

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 39/113 (34%), Positives = 59/113 (52%)
 Frame = -3

Query: 465 DRQLRQKIAILCXMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHI 286
           +R+L +KI ILC ME+ F+++S  R +    IA   ++ + +VE L+MK+L+  LI G I
Sbjct: 279 ERKLLEKINILCLMEIIFSRASEDRTIPLSVIAERTKLSISDVEYLLMKSLSVHLIEGII 338

Query: 285 DQVRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADLLATVQPDLIIA 127
           D+V S   V WV+P              +DAW   V      +    PDL+ A
Sbjct: 339 DEVDSTVHVSWVQPRVLGIPQVKALRERLDAWVGKVHTTLLSVEAETPDLVAA 391


>01_05_0085 -
           17995800-17995985,17996724-17996823,17996919-17997115,
           17997836-17997916,17998046-17998492,17998774-17998920
          Length = 385

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 39/113 (34%), Positives = 57/113 (50%)
 Frame = -3

Query: 465 DRQLRQKIAILCXMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHI 286
           +R+L +KI ILC ME+ F + S  R +    IA   ++ + +VE L+MK+L+  LI G I
Sbjct: 273 ERKLLEKINILCLMEIIFTRPSEDRTIPLSVIAERTKLSISDVEYLLMKSLSVHLIEGII 332

Query: 285 DQVRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADLLATVQPDLIIA 127
           D+V S   V WV+P              +DAW   V      +    PDL+ A
Sbjct: 333 DEVDSTVHVSWVQPRVLGIPQVKALRERLDAWVGKVHTTLLSVEAETPDLVAA 385


>01_01_1222 +
           9877607-9877691,9879235-9879390,9880070-9880148,
           9881471-9881711,9881794-9881868,9881960-9882094,
           9882634-9882821,9882915-9882983,9883060-9883150,
           9883262-9883396,9883675-9883740,9883823-9883935,
           9884020-9884110
          Length = 507

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 372 IAREARIPLDEVELLIMKALAEKLIRGHIDQV 277
           +  E   P  +VE L++  + +  I+GHIDQV
Sbjct: 438 LTEELNFPEKDVEQLLVSLILDNRIQGHIDQV 469


>07_03_1116 -
           24084162-24084201,24084481-24084570,24084640-24085220,
           24085653-24085822,24086006-24087074
          Length = 649

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -3

Query: 495 KSNCDELHKADRQLRQKIAILCXM--EMAFNKSSSQRKL--SFEEIAREARIPLDEV 337
           KS CDEL +  + L +K A  C +  E   N S+ +R     F+E+   A   L EV
Sbjct: 61  KSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALSEV 117


>01_06_0124 -
           26692731-26697046,26698749-26698827,26698899-26698955,
           26699321-26699416
          Length = 1515

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/80 (22%), Positives = 36/80 (45%)
 Frame = -3

Query: 495 KSNCDELHKADRQLRQKIAILCXMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKA 316
           +S+  EL   +  L  KIA+L   + + +    Q + SFE +  +    L+ + ++    
Sbjct: 445 QSSVKELESTNGDLNDKIAVLQNEKNSLSSELQQLEASFENLGNDLEQELERISIMHKNN 504

Query: 315 LAEKLIRGHIDQVRSCATVQ 256
              +L+  ++      ATVQ
Sbjct: 505 EDLELVNSNLQ--NDLATVQ 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,641,186
Number of Sequences: 37544
Number of extensions: 246948
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)