Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P24
         (806 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061232-1|AAL28780.1|  382|Drosophila melanogaster LD17530p pro...    93   4e-19
AF145311-1|AAF08392.1|  382|Drosophila melanogaster 26S proteaso...    93   4e-19
AE014297-3373|AAF56174.1|  382|Drosophila melanogaster CG10230-P...    93   4e-19
AE014297-3372|AAF56173.1|  382|Drosophila melanogaster CG10230-P...    93   4e-19
BT024259-1|ABC86321.1|  119|Drosophila melanogaster IP15827p pro...    54   2e-07
AY118924-1|AAM50784.1|  387|Drosophila melanogaster LD23767p pro...    42   0.001
AE013599-1830|AAF58289.1|  387|Drosophila melanogaster CG8309-PA...    42   0.001
BT004883-1|AAO45239.1|  407|Drosophila melanogaster GH09439p pro...    29   7.5  
AF129082-1|AAD28607.1|  407|Drosophila melanogaster COP9 signalo...    29   7.5  
AE013599-559|AAF59157.1|  407|Drosophila melanogaster CG8725-PA ...    29   7.5  

>AY061232-1|AAL28780.1|  382|Drosophila melanogaster LD17530p
           protein.
          Length = 382

 Score = 93.1 bits (221), Expect = 4e-19
 Identities = 46/112 (41%), Positives = 66/112 (58%)
 Frame = -3

Query: 492 SNCDELHKADRQLRQKIAILCXMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKAL 313
           S   +L   + +LRQKI++LC MEM F +S+ +R +SF +IA+E ++P  EVELLIMKAL
Sbjct: 261 SKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKAL 320

Query: 312 AEKLIRGHIDQVRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADLL 157
           A  L+RG IDQV     + WV+P              +D W  A++    L+
Sbjct: 321 ALDLVRGEIDQVAGVVNMSWVQPRVLNRSQIVGMASTLDTWMGAITNMEKLM 372


>AF145311-1|AAF08392.1|  382|Drosophila melanogaster 26S proteasome
           regulatory complexsubunit p39A protein.
          Length = 382

 Score = 93.1 bits (221), Expect = 4e-19
 Identities = 46/112 (41%), Positives = 66/112 (58%)
 Frame = -3

Query: 492 SNCDELHKADRQLRQKIAILCXMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKAL 313
           S   +L   + +LRQKI++LC MEM F +S+ +R +SF +IA+E ++P  EVELLIMKAL
Sbjct: 261 SKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKAL 320

Query: 312 AEKLIRGHIDQVRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADLL 157
           A  L+RG IDQV     + WV+P              +D W  A++    L+
Sbjct: 321 ALDLVRGEIDQVAGVVNMSWVQPRVLNRSQIVGMASTLDTWMGAITNMEKLM 372


>AE014297-3373|AAF56174.1|  382|Drosophila melanogaster CG10230-PB,
           isoform B protein.
          Length = 382

 Score = 93.1 bits (221), Expect = 4e-19
 Identities = 46/112 (41%), Positives = 66/112 (58%)
 Frame = -3

Query: 492 SNCDELHKADRQLRQKIAILCXMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKAL 313
           S   +L   + +LRQKI++LC MEM F +S+ +R +SF +IA+E ++P  EVELLIMKAL
Sbjct: 261 SKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKAL 320

Query: 312 AEKLIRGHIDQVRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADLL 157
           A  L+RG IDQV     + WV+P              +D W  A++    L+
Sbjct: 321 ALDLVRGEIDQVAGVVNMSWVQPRVLNRSQIVGMASTLDTWMGAITNMEKLM 372


>AE014297-3372|AAF56173.1|  382|Drosophila melanogaster CG10230-PA,
           isoform A protein.
          Length = 382

 Score = 93.1 bits (221), Expect = 4e-19
 Identities = 46/112 (41%), Positives = 66/112 (58%)
 Frame = -3

Query: 492 SNCDELHKADRQLRQKIAILCXMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKAL 313
           S   +L   + +LRQKI++LC MEM F +S+ +R +SF +IA+E ++P  EVELLIMKAL
Sbjct: 261 SKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKAL 320

Query: 312 AEKLIRGHIDQVRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADLL 157
           A  L+RG IDQV     + WV+P              +D W  A++    L+
Sbjct: 321 ALDLVRGEIDQVAGVVNMSWVQPRVLNRSQIVGMASTLDTWMGAITNMEKLM 372


>BT024259-1|ABC86321.1|  119|Drosophila melanogaster IP15827p
           protein.
          Length = 119

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
 Frame = -3

Query: 456 LRQKIAILCXMEMAFNKSSSQRKLSFEEIAREARI---PLDEVELLIMKALAEKLIRGHI 286
           ++  I +L  +          ++ + EE++R A +   P  EVELLIMKALA  L+RG I
Sbjct: 7   MKSVIILLALVAFCHAAPLDVKESTSEELSRPASLALSPAKEVELLIMKALALDLVRGEI 66

Query: 285 DQVRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADLL 157
           DQV     + WV+P              +D W  A++    L+
Sbjct: 67  DQVAGVVNMSWVQPRVLNRSQIVGMASTLDTWMGAITNMEKLM 109


>AY118924-1|AAM50784.1|  387|Drosophila melanogaster LD23767p
           protein.
          Length = 387

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 26/104 (25%), Positives = 48/104 (46%)
 Frame = -3

Query: 459 QLRQKIAILCXMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHIDQ 280
           Q  +K+ +L  M++A     S  +++FE + +E +I  DEVE  +++ L  KL+R  +DQ
Sbjct: 273 QNMKKMRLLTFMQLA----ESSPEMTFETLTKELQINEDEVEPFVIEVLKTKLVRARLDQ 328

Query: 279 VRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADLLATV 148
                 +                   + AW+E +S   + L +V
Sbjct: 329 ANQKVHISSTMHRTFGAPQWEQLRDLLQAWKENLSTVREGLTSV 372


>AE013599-1830|AAF58289.1|  387|Drosophila melanogaster CG8309-PA
           protein.
          Length = 387

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 26/104 (25%), Positives = 48/104 (46%)
 Frame = -3

Query: 459 QLRQKIAILCXMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHIDQ 280
           Q  +K+ +L  M++A     S  +++FE + +E +I  DEVE  +++ L  KL+R  +DQ
Sbjct: 273 QNMKKMRLLTFMQLA----ESSPEMTFETLTKELQINEDEVEPFVIEVLKTKLVRARLDQ 328

Query: 279 VRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADLLATV 148
                 +                   + AW+E +S   + L +V
Sbjct: 329 ANQKVHISSTMHRTFGAPQWEQLRDLLQAWKENLSTVREGLTSV 372


>BT004883-1|AAO45239.1|  407|Drosophila melanogaster GH09439p
           protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 405 SSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHIDQV 277
           S     ++FEE+     IP  + E +  + + E  + GHIDQ+
Sbjct: 320 SKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQI 362


>AF129082-1|AAD28607.1|  407|Drosophila melanogaster COP9
           signalosome subunit 4 CSN4 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 405 SSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHIDQV 277
           S     ++FEE+     IP  + E +  + + E  + GHIDQ+
Sbjct: 320 SKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQI 362


>AE013599-559|AAF59157.1|  407|Drosophila melanogaster CG8725-PA
           protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 405 SSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHIDQV 277
           S     ++FEE+     IP  + E +  + + E  + GHIDQ+
Sbjct: 320 SKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQI 362


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,720,379
Number of Sequences: 53049
Number of extensions: 402371
Number of successful extensions: 823
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3777934368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)