Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_P21
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.016
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.038
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.62
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.82
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 7.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.016
Identities = 23/86 (26%), Positives = 26/86 (30%), Gaps = 1/86 (1%)
Frame = -1
Query: 735 AXPRXTRPXTPPXXXPXRRGHPX-PXPATXXXXXPPXXPXPXRPAXXXPXXXXPXTXPHX 559
A P + P PP R P P P + PP P P+ P P
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS- 452
Query: 558 TXXRPTTPXRXPXXXPXPTPXPXPXP 481
P P P P P P P P
Sbjct: 453 APIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/80 (23%), Positives = 20/80 (25%)
Frame = -1
Query: 720 TRPXTPPXXXPXRRGHPXPXPATXXXXXPPXXPXPXRPAXXXPXXXXPXTXPHXTXXRPT 541
+ P PP P R P P P P P P P P
Sbjct: 386 SNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPA 445
Query: 540 TPXRXPXXXPXPTPXPXPXP 481
P P P P P P
Sbjct: 446 APP-LPPSAPIAPPLPAGMP 464
Score = 29.1 bits (62), Expect = 0.82
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -3
Query: 706 PPTXPXAPPRXPRXXARXXXPXTPAXXPXPPPXRPP 599
PP P AP P P P P PPP P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/80 (23%), Positives = 22/80 (27%)
Frame = -1
Query: 726 RXTRPXTPPXXXPXRRGHPXPXPATXXXXXPPXXPXPXRPAXXXPXXXXPXTXPHXTXXR 547
R P PP P P P ++ PP P P P P +
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPP-APPPAIPGRSAPALPPLGNASRTSTPP 416
Query: 546 PTTPXRXPXXXPXPTPXPXP 487
TP P P P P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAP 436
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -3
Query: 703 PTXPXAPPRXPRXXARXXXPXTPA-XXPXPPPXRPPT 596
PT APP P + P+ P PPP PP+
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPS 260
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = -3
Query: 685 PPRXPRXXARXXXPXTP---AXXPXPPPXRPPTT 593
PP PR A P P + P PPP P+T
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.038
Identities = 25/91 (27%), Positives = 26/91 (28%), Gaps = 2/91 (2%)
Frame = -1
Query: 747 PXRDAXPRXTRPXT--PPXXXPXRRGHPXPXPATXXXXXPPXXPXPXRPAXXXPXXXXPX 574
P P +P PP P P P PA PP P P P P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV---PPVPPPSEAPPVPKPSVGVPP 1209
Query: 573 TXPHXTXXRPTTPXRXPXXXPXPTPXPXPXP 481
P T TP P PT P P
Sbjct: 1210 VPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 26.2 bits (55), Expect = 5.8
Identities = 21/89 (23%), Positives = 23/89 (25%)
Frame = -1
Query: 747 PXRDAXPRXTRPXTPPXXXPXRRGHPXPXPATXXXXXPPXXPXPXRPAXXXPXXXXPXTX 568
P A P PP P P P P+ P P PA P P
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA---PSSGIPPVP 1182
Query: 567 PHXTXXRPTTPXRXPXXXPXPTPXPXPXP 481
P P P P+ P P
Sbjct: 1183 KPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.62
Identities = 21/85 (24%), Positives = 23/85 (27%)
Frame = -1
Query: 747 PXRDAXPRXTRPXTPPXXXPXRRGHPXPXPATXXXXXPPXXPXPXRPAXXXPXXXXPXTX 568
P A P PP P R P P PA+ P P P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP----SSLPPPAQPAAP 180
Query: 567 PHXTXXRPTTPXRXPXXXPXPTPXP 493
P+ P P P P P
Sbjct: 181 VKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.82
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = -1
Query: 747 PXRDAXPRXTRPXTPPXXXPXRRGHPXPXPATXXXXXPPXXPXPXRPAXXXPXXXXP 577
P A P+ + P TPP P P P A PP P P PA P P
Sbjct: 1694 PQSAAPPQMSAP-TPP---PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Frame = -1
Query: 750 GPXRDAXPRXTRPXTPPXXXPXRRGHPXPXPATXXXXXPP-XXPXPXRPAXXXPXXXXPX 574
G A P T P P P + P P P PP P P P P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
Query: 573 TXP 565
+ P
Sbjct: 1739 SAP 1741
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 319 LRSLISNLSNTCDLTPLPEWSCEQSAW 239
+RS+ L D+TP+ +W ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,556
Number of Sequences: 5004
Number of extensions: 16111
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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