Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P18
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      35   0.015
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.3  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 3/150 (2%)
 Frame = -1

Query: 608 GKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYM--WNVEARNAAITNCY 435
           GK+ V IC+         +   NGA+++      +A    + Y   W++  +  A  NC 
Sbjct: 143 GKLGVMICWDTAFPEVARIHALNGADLL-----VVATNWENPYSDDWDLVTKARAFENCI 197

Query: 434 FTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAA 255
              A NRVG +E  +                F+G S   GP G     L   ++G++   
Sbjct: 198 PLVAANRVGTDEKLS----------------FFGHSKIIGPTGKVIKALDEEKEGVISYT 241

Query: 254 VDLNLNRQIRDRRCYYMTQRL-DMYVNSLS 168
           VDL+  + +R     +   R+ D+Y   LS
Sbjct: 242 VDLDDAKPLRKNYYTFFEDRMPDLYKRLLS 271


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 442 FVIAAFLASTFHMYSLPPSPAIVAD 516
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,600
Number of Sequences: 5004
Number of extensions: 58619
Number of successful extensions: 160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)