Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P18
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   220   9e-58
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711...    31   1.0  
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350...    30   1.8  
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    28   7.4  
11_04_0354 + 16697571-16700256,16700335-16700759                       28   9.7  
07_03_1126 - 24166758-24166879,24166948-24167386,24167708-241678...    28   9.7  
05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033     28   9.7  
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902...    28   9.7  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  220 bits (538), Expect = 9e-58
 Identities = 114/203 (56%), Positives = 136/203 (66%)
 Frame = -1

Query: 740 LGXTGNVIGKQSQEPHFRESAIXNESNYYMER*HXAILYSRPDTGKIAVNICFGRHHVLN 561
           +G  GN+IG   +  H       NES YYME      ++     GKI VNIC+GRHH LN
Sbjct: 211 IGNHGNIIGIHRKN-HIPRVGDFNESTYYMEGNTGHPVFETA-YGKIGVNICYGRHHPLN 268

Query: 560 WMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFT 381
           W+ FG NGAEIVFNPSAT+ GE  SE MW +EARNAAI N YF  +INRVG E FPN FT
Sbjct: 269 WLAFGLNGAEIVFNPSATV-GEL-SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFT 326

Query: 380 SADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMT 201
           S DGKP H D G FYGSS+F  PD    P LSR RDGL+I+ +DLNL RQI+D+  + MT
Sbjct: 327 SGDGKPQHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMDLNLCRQIKDKWGFRMT 386

Query: 200 QRLDMYVNSLSKVLELDYKPQVV 132
            R D Y + LS+ L+ D+KPQV+
Sbjct: 387 ARYDTYASLLSEYLKPDFKPQVI 409


>02_04_0096 +
           19669428-19669525,19670770-19670818,19671041-19671132,
           19671235-19671386,19671478-19671524,19671617-19671650,
           19671769-19671935,19672070-19672166,19672239-19672408
          Length = 301

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 6/146 (4%)
 Frame = -1

Query: 602 IAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEG-----GSEYMWNVEARNAAITNC 438
           I V IC+ +            GAEI+F P+A I  E       S   W    +  A  N 
Sbjct: 155 IGVGICWDQWFPECARAMVLQGAEILFYPTA-IGSEPQDNNLDSREHWKRVMQGHAGANL 213

Query: 437 YFTAAINRVGYEEFPNEFTSADGKPAHKDLGL-FYGSSYFCGPDGVRCPGLSRTRDGLLI 261
               A NR+G E    E         H +  + F+G+S+  GP G      +   + +L+
Sbjct: 214 VPLVASNRIGRETVETE---------HGESTITFFGNSFIAGPTGEIVKLANDKDEDVLV 264

Query: 260 AAVDLNLNRQIRDRRCYYMTQRLDMY 183
           A  DL+  +  R     +  +R D+Y
Sbjct: 265 AEFDLDEIKSTRHGWGIFRDRRPDLY 290


>02_01_0487 +
           3503003-3503037,3505802-3505833,3506012-3506127,
           3506227-3506437,3506555-3506792,3507075-3507252,
           3507962-3508079,3508167-3508373,3509134-3509234
          Length = 411

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -1

Query: 524 FNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 345
           F+PS  I GEGG   ++  + RN  +      +  +R G +EF NE   A    +H++L 
Sbjct: 45  FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102

Query: 344 LFYG 333
             YG
Sbjct: 103 KLYG 106


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 267 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEVAV 443
           +  SG      P+A+ A E   + E  ++ V R P     LVR + + +S +   E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400


>11_04_0354 + 16697571-16700256,16700335-16700759
          Length = 1036

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 198 LGHVITTSVSDLSVQVQVHGRD*QAVSGAGQTGAPNAVG 314
           LG V+ TSVS+LS Q+Q+       +SG    G  N VG
Sbjct: 331 LGGVLPTSVSNLSAQLQLLYVGFNKISGNIPFGISNLVG 369


>07_03_1126 -
           24166758-24166879,24166948-24167386,24167708-24167875,
           24168388-24168675,24169468-24169575,24169759-24169811,
           24170033-24170192,24170353-24170442,24170902-24170953,
           24171156-24171283
          Length = 535

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 642 LPFHVVVGFVXNRRLSEMWFLRLLPDHVSGVP 737
           L + V + +  + R ++M  +R  PDHV+G P
Sbjct: 211 LGYSVAIAYSLSGRAAKMSLIRPRPDHVAGTP 242


>05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033
          Length = 143

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 258 GRGLEPEQTDQRQTLLLHDPTPGHVREQSQQSTRAGLQ 145
           G+G EP+  D ++ L ++D  PG   E  Q S+ AGL+
Sbjct: 89  GKGHEPDWRDLQELLRIYD--PGTSTECKQASSGAGLR 124


>01_01_1138 -
           9019049-9019159,9019525-9019606,9020059-9020177,
           9020977-9021096,9021313-9021383,9021801-9021948
          Length = 216

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
 Frame = +3

Query: 282 AGQTGAPNAVGAAEVA-----RSVEQAQVFVCRFPVSRSELVRELL------VADSVDGR 428
           A +   PNA+ AAE+       S+ Q   ++     +  E + E L      +A+    R
Sbjct: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIANKYLSR 184

Query: 429 CEVAVRDSCVPSF--NVPHVLAAAFSGDRR 512
             +++   C P +   +PH +A AFSG+RR
Sbjct: 185 SHLSI--DCRPDWMTRIPHYIAVAFSGERR 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,790,537
Number of Sequences: 37544
Number of extensions: 435530
Number of successful extensions: 1314
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)