Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P17
         (942 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0981 - 33278735-33278746,33278882-33279022,33279145-332791...    28   9.4  

>02_05_0981 -
           33278735-33278746,33278882-33279022,33279145-33279199,
           33279787-33279950,33280043-33280139,33280507-33280678,
           33281107-33281182,33281545-33281661,33281928-33282007,
           33282225-33282398,33282636-33282765,33282855-33282941,
           33283039-33283302,33284131-33284256
          Length = 564

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 28  LGGTAVKPWGPLXRDXXKSGPGTLEXXNQXXAF 126
           +G + V+ WGPL     +SGP      NQ   F
Sbjct: 1   MGASEVRSWGPLGHLSPRSGPSGDSMKNQRFCF 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,972
Number of Sequences: 37544
Number of extensions: 189629
Number of successful extensions: 516
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)