Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P16
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    39   0.001
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    37   0.003
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.016
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   0.68 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.81 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   2.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.3  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +3

Query: 648 PPPPPPPXXXXGXGGXXXPPPPP 716
           PPPPPPP    G G    PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.61
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 641 KXPPPPPPPXGXXXXXXXXXPPPPPPP 721
           K PPPPPP            P PPP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAP 756



 Score = 29.1 bits (62), Expect = 0.81
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 648 PPPPPPPXXXXGXGGXXXPPPPP 716
           PPPPPPP      GG     P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 29.1 bits (62), Expect = 0.81
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 648 PPPPPPPXXXXGXGGXXXPPPPPPQXNXK 734
           PPPPPPP      G     P P  +   K
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 647 PPPPPPPXGXXXXXXXXXPPPPPPP 721
           P P P P           PPPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = +2

Query: 647 PPPPPPPXGXXXXXXXXXPPPPPPP 721
           PPPPPPP G         PPPPPPP
Sbjct: 9   PPPPPPPPG---FEPPSQPPPPPPP 30



 Score = 29.5 bits (63), Expect = 0.61
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 648 PPPPPPPXXXXGXGGXXXPPPPPP 719
           PPPPPP     G      PPPPPP
Sbjct: 11  PPPPPP-----GFEPPSQPPPPPP 29



 Score = 23.8 bits (49), Expect(2) = 1.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 702 PPPPPPQXNXKXPXKXXXXP 761
           PPPPPP    + P +    P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 22.2 bits (45), Expect(2) = 1.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 690 GXXXPPPPPP 719
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16



 Score = 22.2 bits (45), Expect(2) = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 691 GXXXPPPPPP 720
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16



 Score = 21.4 bits (43), Expect(2) = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 703 PPPPPPKXXXK 735
           PPPPPP    K
Sbjct: 24  PPPPPPPGYVK 34


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
 Frame = +3

Query: 621 GXGXXXKKXPPPPPPPXXXXGXG------GXXXPPPPPPQ 722
           G G      PPPPPPP             G   PPPPPP+
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367



 Score = 33.9 bits (74), Expect = 0.029
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
 Frame = +3

Query: 639 KKXPPPPPPP------XXXXGXG---GXXXPPPPPPQXN 728
           KK PPPPPPP          G G       PPPPPP+ N
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSN 346



 Score = 31.5 bits (68), Expect = 0.15
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
 Frame = +2

Query: 635 KXKXPPPPPP-------PXGXXXXXXXXXPPPPPPPK 724
           K + PPPPPP       P           PPPPPPP+
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect(2) = 0.68
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 647  PPPPPPP 667
            PPPPPPP
Sbjct: 1095 PPPPPPP 1101



 Score = 23.8 bits (49), Expect(2) = 0.68
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 701  PPPPPPP 721
            PPPPPPP
Sbjct: 1096 PPPPPPP 1102


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 724 FWGGGGGGXXXPPXPXXXXGGGGGGG 647
           F G GGG    PP P    G GG GG
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGG 215


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 648  PPPPPPPXXXXGXGGXXXPP 707
            PPPPPPP      GG    P
Sbjct: 946  PPPPPPPPLVSAAGGKFVSP 965



 Score = 23.8 bits (49), Expect(2) = 3.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 701 PPPPPPP 721
           PPPPPPP
Sbjct: 945 PPPPPPP 951



 Score = 21.0 bits (42), Expect(2) = 3.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 647 PPPPPP 664
           PPPPPP
Sbjct: 907 PPPPPP 912


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect(2) = 2.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 701 PPPPPPPK 724
           PPPPPPP+
Sbjct: 371 PPPPPPPE 378



 Score = 21.8 bits (44), Expect(2) = 2.0
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +2

Query: 620 WGGEXKXKXPPPPPP 664
           W        PPPPPP
Sbjct: 363 WSNISYSPPPPPPPP 377


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 663 PPXXXXGXGGXXXPPPPPPQXN 728
           P       GG   PPPPPP  N
Sbjct: 295 PSSGDSANGGLPPPPPPPPPSN 316


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 22.6 bits (46), Expect(2) = 4.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 701 PPPPPPPK 724
           PPPP PPK
Sbjct: 222 PPPPAPPK 229



 Score = 22.2 bits (45), Expect(2) = 4.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 641 KXPPPPPPP 667
           K PPPP PP
Sbjct: 220 KKPPPPAPP 228


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
 Frame = +2

Query: 647  PPP---PPPPXGXXXXXXXXXPPPPPPP 721
            PPP   PPPP            PPPP P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 647 PPPPPPPXGXXXXXXXXXPPPPPPP 721
           PP    P           PPPPPPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,869
Number of Sequences: 5004
Number of extensions: 24473
Number of successful extensions: 392
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)