Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P14
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.37 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.37 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   1.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.4  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   4.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   4.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   6.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   6.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 444  KESIENEKTVRVTRKRKYEEITKPVLREKGQNG 346
            KES EN++     R+R Y  I K  L++    G
Sbjct: 1649 KESQENQQNAETQRERYYATIHKVALQQAANTG 1681


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 444  KESIENEKTVRVTRKRKYEEITKPVLREKGQNG 346
            KES EN++     R+R Y  I K  L++    G
Sbjct: 1645 KESQENQQNAETQRERYYATIHKVALQQAANTG 1677


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 16/77 (20%), Positives = 32/77 (41%)
 Frame = -2

Query: 444 KESIENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKKKETLTLNQQED 265
           +E  E ++        K + + +   R++    R   Q S +   K +K    +  +  D
Sbjct: 10  REYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRD 69

Query: 264 QMRMTRSRKRRLEVSLS 214
           +    RSR+ ++  SLS
Sbjct: 70  RTERERSREPKIISSLS 86


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 16/77 (20%), Positives = 32/77 (41%)
 Frame = -2

Query: 444 KESIENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKKKETLTLNQQED 265
           +E  E ++        K + + +   R++    R   Q S +   K +K    +  +  D
Sbjct: 10  REYKEKDRRYEKLYNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRD 69

Query: 264 QMRMTRSRKRRLEVSLS 214
           +    RSR+ ++  SLS
Sbjct: 70  RTERERSREPKIISSLS 86


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 261 MRMTRSRKRRLEVSLSPSEVKS 196
           M+ T   K++ + SLSPSE +S
Sbjct: 534 MKETEEEKKKTKQSLSPSENQS 555


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 15/77 (19%), Positives = 31/77 (40%)
 Frame = -2

Query: 444 KESIENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKKKETLTLNQQED 265
           +E  E ++        K + + +   R++    R   Q S +     +K    +  +  D
Sbjct: 10  REYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRD 69

Query: 264 QMRMTRSRKRRLEVSLS 214
           +    RSR+ ++  SLS
Sbjct: 70  RTERERSREPKIISSLS 86


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 21/92 (22%), Positives = 39/92 (42%)
 Frame = -2

Query: 477 RSEEXPTVESPKESIENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKK 298
           R+ E    +   E + NEK      ++  EE T    R++    R   Q S +     +K
Sbjct: 241 RNREYRKKDRQYEKLHNEK------EKLLEERTS---RKRYSRSREREQRSYKNENSYRK 291

Query: 297 KETLTLNQQEDQMRMTRSRKRRLEVSLSPSEV 202
               +  +  D++   RSR+ ++  SLS + +
Sbjct: 292 YRETSKERSRDRIERERSREPKIISSLSNNTI 323


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = -2

Query: 366 REKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSEV 202
           R++    R   Q S +   + +K    +  +  D+    RSR+ ++  SLS + +
Sbjct: 35  RKRNSRSREREQNSYKNEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTI 89


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = -2

Query: 366 REKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSEV 202
           R++    R   Q S +   + +K    +  +  D+    RSR+ ++  SLS + +
Sbjct: 35  RKRNSRSREREQNSYKNEREYRKYRETSKERSRDRAERERSREPKIISSLSNNTI 89


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 15/77 (19%), Positives = 32/77 (41%)
 Frame = -2

Query: 444 KESIENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKKKETLTLNQQED 265
           +E  E ++        K + + +   R++    R   Q S +   + +K    +  +  D
Sbjct: 243 REYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRERSKERSRD 302

Query: 264 QMRMTRSRKRRLEVSLS 214
           +    RSR+ ++  SLS
Sbjct: 303 RTERERSREPKIISSLS 319


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 21/88 (23%), Positives = 38/88 (43%)
 Frame = -2

Query: 477 RSEEXPTVESPKESIENEKTVRVTRKRKYEEITKPVLREKGQNGRATRQASERKTIKAKK 298
           R+ E    +   E + NEK      ++  EE T    R++    R   Q S +   + +K
Sbjct: 230 RNREYRKKDRQYEKLHNEK------EKLLEERTS---RKRYSRSREREQKSYKNEREYRK 280

Query: 297 KETLTLNQQEDQMRMTRSRKRRLEVSLS 214
               +  +  D+M   RS++ ++  SLS
Sbjct: 281 YGKTSKERSRDRMERERSKEPKIISSLS 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,022
Number of Sequences: 438
Number of extensions: 3795
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)