Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P12
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   209   4e-55
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   209   4e-55
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.57 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    28   1.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   3.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.0  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.0  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  209 bits (510), Expect = 4e-55
 Identities = 102/161 (63%), Positives = 121/161 (75%)
 Frame = -1

Query: 593 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 414
           GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 413 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 234
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 233 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 33/74 (44%), Positives = 45/74 (60%)
 Frame = -3

Query: 777 QKKAHIMEIQXNGVPSRTKVKWXREHLGETYPCRXCACPKMK*XTALVSPKGKXYKGVTS 598
           QKKAH+MEIQ NG     KV+W REH  +T   +     + +    +   +GK  +G T+
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 597 RWHTKKLPRKTHQG 556
           RW TK+LPRKTH+G
Sbjct: 232 RWGTKRLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  209 bits (510), Expect = 4e-55
 Identities = 102/161 (63%), Positives = 121/161 (75%)
 Frame = -1

Query: 593 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 414
           GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 413 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 234
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 233 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 33/74 (44%), Positives = 45/74 (60%)
 Frame = -3

Query: 777 QKKAHIMEIQXNGVPSRTKVKWXREHLGETYPCRXCACPKMK*XTALVSPKGKXYKGVTS 598
           QKKAH+MEIQ NG     KV+W REH  +T   +     + +    +   +GK  +G T+
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 597 RWHTKKLPRKTHQG 556
           RW TK+LPRKTH+G
Sbjct: 232 RWGTKRLPRKTHRG 245


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 402 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVA 581
           NFA+L+  SL ++ +F++H +T    +   T+Y   +   +  +N  N  K   + + + 
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432

Query: 582 SLCANEK 602
           SL AN +
Sbjct: 433 SLPANSR 439


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -2

Query: 175 SVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRENKHLTMQKKK 8
           SV+ +SR+R   +HS   +RR+   ++  L   Q+   AA    RE +HLT+ +KK
Sbjct: 2   SVVNESRKRRRLIHSEKETRRLDLGEEDDLELFQKE--AAWRRSREYEHLTVLEKK 55


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 369 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 491
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 199 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 86
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 132 HGYTQEGSYSRRSCGYHNPS 73
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 354 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 482
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 414 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 539
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,085
Number of Sequences: 5004
Number of extensions: 71420
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)