Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P08
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical ...    29   4.0  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   9.3  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   9.3  

>AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical
           protein Y56A3A.2 protein.
          Length = 616

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -3

Query: 367 IIDYKVKIADNNLVTHKEPALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDN 188
           +IDY +++A      H EP L++S   G  V  F    Y +  P DT+L +    ++ D 
Sbjct: 19  LIDYVLRVA------HFEPYLRLSHRFGIEVSPFQLRFYVTPAPKDTLLSEKPTDIVVDE 72

Query: 187 K 185
           +
Sbjct: 73  E 73


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 566  PLSSEAPSAYLTPSSLGMAKGVSPP 492
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 566  PLSSEAPSAYLTPSSLGMAKGVSPP 492
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,452,871
Number of Sequences: 27780
Number of extensions: 318271
Number of successful extensions: 938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)