Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P06
         (1120 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect(2) = 9.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 25  PPPPPXPP 2
           PPPPP PP
Sbjct: 775 PPPPPPPP 782



 Score = 23.4 bits (48), Expect(2) = 9.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 25  PPPPPXPP 2
           PPPPP PP
Sbjct: 776 PPPPPPPP 783



 Score = 20.6 bits (41), Expect(2) = 9.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 31  PXPPPPP 11
           P PPPPP
Sbjct: 761 PPPPPPP 767



 Score = 20.6 bits (41), Expect(2) = 9.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 31  PXPPPPP 11
           P PPPPP
Sbjct: 762 PPPPPPP 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 828,408
Number of Sequences: 5004
Number of extensions: 5426
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 593670236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)