Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_P06
(1120 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 26 1.2
07_01_0080 + 587674-588510 26 1.3
04_03_0057 + 10407402-10407452,10407540-10407782,10408506-104089... 26 1.6
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 31 2.2
03_05_0865 - 28365430-28367640 26 4.4
09_03_0145 - 12749288-12751510 26 5.7
01_05_0490 + 22672241-22674679 26 7.3
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 26 7.4
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652 26 7.4
07_01_1207 + 11511754-11513865 26 7.4
12_01_0495 - 3935395-3937110 26 7.5
12_02_0408 + 18659494-18660362,18660472-18660634,18660976-186611... 26 7.6
01_05_0307 - 20701860-20702168,20702291-20703083,20703183-207032... 26 7.7
05_01_0210 + 1583176-1584177 26 7.9
11_01_0621 - 4981070-4981136,4982906-4983825 26 7.9
>12_02_1174 - 26696869-26698191
Length = 440
Score = 25.8 bits (54), Expect(2) = 1.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 159 PPPPPPPRPP 168
Score = 24.2 bits (50), Expect(2) = 1.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 76 SITIPRFXD*RTLXXPXPPPPPXP 5
S T P F L P PPPPP P
Sbjct: 107 SATSPEFKTPPALS-PVPPPPPPP 129
>07_01_0080 + 587674-588510
Length = 278
Score = 25.8 bits (54), Expect(2) = 1.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 108 PPPPPPPPPP 117
Score = 24.2 bits (50), Expect(2) = 1.3
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 70 TIPRFXD*RTLXXPXPPPPPXP 5
T PR P PPPPP P
Sbjct: 78 TPPRLGGDGMFRRPPPPPPPPP 99
>04_03_0057 +
10407402-10407452,10407540-10407782,10408506-10408976,
10409058-10409483,10409559-10409618,10409694-10409807,
10409888-10409956
Length = 477
Score = 25.8 bits (54), Expect(2) = 1.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 416 PPPPPPPSPP 425
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 43 TLXXPXPPPPPXP 5
T P PPPPP P
Sbjct: 410 TTFKPAPPPPPPP 422
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 30.7 bits (66), Expect = 2.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 46 RTLXXPXPPPPPXPP 2
RTL P PPPPP PP
Sbjct: 60 RTLPPPPPPPPPQPP 74
>03_05_0865 - 28365430-28367640
Length = 736
Score = 25.8 bits (54), Expect(2) = 4.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 46 PRPPPPPPPP 55
Score = 22.2 bits (45), Expect(2) = 4.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 46 RTLXXPXPPPPP 11
++L P PPPPP
Sbjct: 43 QSLPRPPPPPPP 54
>09_03_0145 - 12749288-12751510
Length = 740
Score = 25.8 bits (54), Expect(2) = 5.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 28 PSPPPPPPPP 37
Score = 21.8 bits (44), Expect(2) = 5.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 64 PRFXD*RTLXXPXPPPPP 11
P F T P PPPPP
Sbjct: 19 PPFKPKPTNPSPPPPPPP 36
>01_05_0490 + 22672241-22674679
Length = 812
Score = 25.8 bits (54), Expect(2) = 7.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 697 PPPPPPPPPP 706
Score = 21.4 bits (43), Expect(2) = 7.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 40 LXXPXPPPPP 11
L P PPPPP
Sbjct: 696 LPPPPPPPPP 705
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 25.8 bits (54), Expect(2) = 7.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 101 PPPPPPPPPP 110
Score = 21.4 bits (43), Expect(2) = 7.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 40 LXXPXPPPPP 11
L P PPPPP
Sbjct: 100 LPPPPPPPPP 109
>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
Length = 717
Score = 25.8 bits (54), Expect(2) = 7.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 203 PPPPPPPPPP 212
Score = 21.4 bits (43), Expect(2) = 7.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 40 LXXPXPPPPP 11
L P PPPPP
Sbjct: 202 LPPPPPPPPP 211
>07_01_1207 + 11511754-11513865
Length = 703
Score = 25.8 bits (54), Expect(2) = 7.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 11 PRPPPPPPPP 20
Score = 21.4 bits (43), Expect(2) = 7.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 40 LXXPXPPPPP 11
L P PPPPP
Sbjct: 10 LPRPPPPPPP 19
>12_01_0495 - 3935395-3937110
Length = 571
Score = 25.8 bits (54), Expect(2) = 7.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 10 PPPPPPPPPP 19
Score = 21.4 bits (43), Expect(2) = 7.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 40 LXXPXPPPPP 11
L P PPPPP
Sbjct: 9 LPPPPPPPPP 18
>12_02_0408 +
18659494-18660362,18660472-18660634,18660976-18661139,
18661253-18661511,18661605-18661712
Length = 520
Score = 25.8 bits (54), Expect(2) = 7.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 145 PPPPPPPPPP 154
Score = 21.4 bits (43), Expect(2) = 7.6
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 52 D*RTLXXPXPPPPP 11
D R P PPPPP
Sbjct: 140 DVRCSPPPPPPPPP 153
>01_05_0307 -
20701860-20702168,20702291-20703083,20703183-20703278,
20703391-20703518
Length = 441
Score = 25.8 bits (54), Expect(2) = 7.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 253 PLPPPPPPPP 262
Score = 21.4 bits (43), Expect(2) = 7.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 40 LXXPXPPPPP 11
L P PPPPP
Sbjct: 252 LPLPPPPPPP 261
>05_01_0210 + 1583176-1584177
Length = 333
Score = 25.8 bits (54), Expect(2) = 7.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 32 PPPPPPPPPP 41
Score = 21.4 bits (43), Expect(2) = 7.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 40 LXXPXPPPPP 11
L P PPPPP
Sbjct: 31 LPPPPPPPPP 40
>11_01_0621 - 4981070-4981136,4982906-4983825
Length = 328
Score = 25.8 bits (54), Expect(2) = 7.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 31 PXPPPPPXPP 2
P PPPPP PP
Sbjct: 134 PLPPPPPTPP 143
Score = 21.4 bits (43), Expect(2) = 7.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -1
Query: 46 RTLXXPXPPPPPXP 5
R + PPPPP P
Sbjct: 121 RDIVESPPPPPPHP 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,997,158
Number of Sequences: 37544
Number of extensions: 90995
Number of successful extensions: 4002
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2760
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3374709644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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