Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P01
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   101   1e-22
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   100   2e-22
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    29   1.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.8  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  101 bits (242), Expect = 1e-22
 Identities = 56/130 (43%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
 Frame = -1

Query: 760 KGPLHNFQQGFRVXLAXSAXSPGVEXXXXXXXXXXXXXPGGHXGRFVIWTQSAFGRLDPL 581
           +GPL  F +   +  A     PGVE             PGGH GRFVIWT+SAFG LD +
Sbjct: 205 RGPLVVFNEDAGIVKAFRNI-PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSV 263

Query: 580 FGSWKTPSKQKKNFNLPQPKMANTDLTRFXKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 407
           FGS    ++ KKN+ LP+  ++N D+TR   SDEI+ +++A    RV RA  +K NPL N
Sbjct: 264 FGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323

Query: 406 NKAMLKLNPY 377
              + +LNPY
Sbjct: 324 KAVLARLNPY 333



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 792 G*MXTRXXIQVKGPFIIFNKDSG 724
           G +  R  +Q +GP ++FN+D+G
Sbjct: 194 GKLRNRRHVQRRGPLVVFNEDAG 216


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  100 bits (240), Expect = 2e-22
 Identities = 56/130 (43%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
 Frame = -1

Query: 760 KGPLHNFQQGFRVXLAXSAXSPGVEXXXXXXXXXXXXXPGGHXGRFVIWTQSAFGRLDPL 581
           +GPL  F +   +  A     PGVE             PGGH GRFVIWT+SAFG LD +
Sbjct: 205 RGPLVVFNEDTGIVKAFRNI-PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSV 263

Query: 580 FGSWKTPSKQKKNFNLPQPKMANTDLTRFXKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 407
           FGS    ++ KKN+ LP+  ++N D+TR   SDEI+ +++A    RV RA  +K NPL N
Sbjct: 264 FGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323

Query: 406 NKAMLKLNPY 377
              + +LNPY
Sbjct: 324 KAVLSRLNPY 333



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 792 G*MXTRXXIQVKGPFIIFNKDSG 724
           G +  R  +Q +GP ++FN+D+G
Sbjct: 194 GKLRNRRHVQRRGPLVVFNEDTG 216


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +2

Query: 374 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLXKTCEVSVGHLWLGQ 535
           +V +EF+ RL IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 556 KQKKNFNLPQPKMANTDLTRFXKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 380
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQ--ASPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,247
Number of Sequences: 5004
Number of extensions: 35155
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)