Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_P01
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    93   3e-19
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    28   7.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
 Frame = -1

Query: 697 PGVEXXXXXXXXXXXXXPGGHXGRFVIWTQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPK 521
           PGV+             PGGH GR +IWT+SAF +LD ++G+    S Q KK +++P P 
Sbjct: 224 PGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPI 283

Query: 520 MANTDLTRFXKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 377
           MAN+D +R  +S+E+ K +RAP K  +      NPL     + KLNPY
Sbjct: 284 MANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPY 331


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -2

Query: 606 PHSAGLTPCSX---HGRHHRNKRRTSTCPSQRWPTLTSHVXSSLMRSGRSSVLPTNA*SV 436
           P+S   TP S     G+ HR     S      +PT+     SS+M S  S  LP+ + S 
Sbjct: 540 PYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIRLPSTSFSN 599

Query: 435 LHAN*TRSPIT 403
            + N +   +T
Sbjct: 600 QYPNNSTCSLT 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,146,089
Number of Sequences: 27780
Number of extensions: 209442
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)