Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_O23
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...    87   1e-17
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    29   4.8  
07_03_0436 - 18188221-18188373,18189121-18189233,18189817-181898...    29   6.4  
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389           28   8.5  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 42/72 (58%), Positives = 46/72 (63%)
 Frame = -1

Query: 503 SEYMWNVEARNAAITNCYFTAAINRVGYEEXPNEFTSADGKPAHKDLGLXYGSSYFCGPD 324
           SE MW +EARNAAI N YF  +INRVG E  PN FTS DGKP H D G  YGSS+F  PD
Sbjct: 291 SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHADFGHFYGSSHFSAPD 350

Query: 323 GVRCPRSVPHQR 288
              C  S+   R
Sbjct: 351 -ASCTPSLSRYR 361



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 33/63 (52%), Positives = 45/63 (71%)
 Frame = -2

Query: 334 AAPTALGAPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVLELDYKP 155
           +AP A   P LSR RDGL+I+ +DLNL RQI+D+  + MT R D Y + LS+ L+ D+KP
Sbjct: 347 SAPDASCTPSLSRYRDGLMISDMDLNLCRQIKDKWGFRMTARYDTYASLLSEYLKPDFKP 406

Query: 154 QVV 146
           QV+
Sbjct: 407 QVI 409


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
 Frame = +1

Query: 190 CSRTCPGVGSCNNNVCL*SVCSGS-SPRPRL-TSRLWCGTDR---------GHLTPSGPQ 336
           C R C  + +C  + C    C G  +P P +   RL CG  +         G + P  P+
Sbjct: 412 CERKCQRLRNCGRHACRRRCCEGDCAPCPEVCDKRLRCGNHKCLSPCHRCHGPIAPPNPE 471

Query: 337 K*LDPXNRPK 366
             L P  R K
Sbjct: 472 FTLKPIKRKK 481


>07_03_0436 -
           18188221-18188373,18189121-18189233,18189817-18189889,
           18189979-18190046,18190132-18190372,18191614-18191732,
           18192977-18193028,18193178-18193192
          Length = 277

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
 Frame = +1

Query: 199 TCPGVGSCN---NNVCL*SVCSGSSPRPRLTSRL----WCGTDRGHL 318
           TCP  G+ N    NVC    C    P P L+ R+      G DR HL
Sbjct: 31  TCPQCGNVNFSFRNVCNRGACGAPRPSPSLSPRVPPPPAAGYDRPHL 77


>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
          Length = 1024

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = -1

Query: 404 EFTSADGKPAHKDLGLXYGSSYFCGPDGVRCPRSVPHQ---RRLVNRG 270
           EF  A      + L     S+YFC  +GV C    PH+     L NRG
Sbjct: 38  EFKKAISMDPQQALMSWNDSNYFCSWEGVSCRVKTPHRVISLNLTNRG 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,709,041
Number of Sequences: 37544
Number of extensions: 310848
Number of successful extensions: 834
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)