Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_O22
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 262 2e-70
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 51 1e-06
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 32 0.68
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350... 30 2.1
04_01_0376 - 4929447-4929731 29 6.3
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 28 8.3
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 28 8.3
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 262 bits (643), Expect = 2e-70
Identities = 125/186 (67%), Positives = 142/186 (76%)
Frame = -2
Query: 688 IPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSA 509
IPRVGDFNES YYMEGNTGHPVF T YGKI VNIC+GRHH LNW+ FG NGAEIVFNPSA
Sbjct: 226 IPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSA 285
Query: 508 TIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGS 329
T+ GE SE MW +EARNAAI N YF +INRVG E FPN FTS DGKP H D G FYGS
Sbjct: 286 TV-GEL-SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHADFGHFYGS 343
Query: 328 SYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVLELD 149
S+F PD P LSR RDGL+I+ +DLNL RQI+D+ + MT R D Y + LS+ L+ D
Sbjct: 344 SHFSAPDASCTPSLSRYRDGLMISDMDLNLCRQIKDKWGFRMTARYDTYASLLSEYLKPD 403
Query: 148 YKPQVV 131
+KPQV+
Sbjct: 404 FKPQVI 409
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 50.8 bits (116), Expect = 1e-06
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 6/175 (3%)
Frame = -2
Query: 688 IPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSA 509
IP + E Y+ G+TG F T+Y I V IC+ + GAEI+F P+A
Sbjct: 126 IPDGPGYQEKFYFNPGDTGFKAFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTA 185
Query: 508 TIAGEG-----GSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 344
I E S W + A N A NR+G E E H +
Sbjct: 186 -IGSEPQDNNLDSREHWKRVMQGHAGANLVPLVASNRIGRETVETE---------HGEST 235
Query: 343 L-FYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMY 182
+ F+G+S+ GP G + + +L+A DL+ + R + +R D+Y
Sbjct: 236 ITFFGNSFIAGPTGEIVKLANDKDEDVLVAEFDLDEIKSTRHGWGIFRDRRPDLY 290
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 31.9 bits (69), Expect = 0.68
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Frame = -2
Query: 628 PVFATRYGKIAVNICF-GRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNA 452
PV+ T GKI IC+ R +L M+ + G +I P+A + W +
Sbjct: 178 PVYDTPIGKIGAVICWENRMPLLRTAMYAK-GVQIYCAPTADFSPS------WQASMTHI 230
Query: 451 AITNCYFTAAIN----RVGYEEFPN-EFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGL 287
A+ F + N R Y P F D +P+ + + ++ G S P G G
Sbjct: 231 AVEGGCFVLSANQFCRRKNYPPAPEYTFGGLDEEPSPESV-IWPGGSSIVSPSGTVLAGP 289
Query: 286 SRTRDGLLIA 257
+ +GLL A
Sbjct: 290 NYEGEGLLTA 299
>02_01_0487 +
3503003-3503037,3505802-3505833,3506012-3506127,
3506227-3506437,3506555-3506792,3507075-3507252,
3507962-3508079,3508167-3508373,3509134-3509234
Length = 411
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -2
Query: 523 FNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 344
F+PS I GEGG ++ + RN + + +R G +EF NE A +H++L
Sbjct: 45 FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102
Query: 343 LFYG 332
YG
Sbjct: 103 KLYG 106
>04_01_0376 - 4929447-4929731
Length = 94
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 598 RSCRIWSRIQDGRCYLPCSSW 660
RSC W +Q GRC CS+W
Sbjct: 63 RSCAAW--LQQGRCSAGCSAW 81
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 266 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEVAV 442
+ SG P+A+ A E + E ++ V R P LVR + + +S + E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 545 SEHHPVQDVVPSE-ADVHRDLAVSGREYRMAGVTFHVVV 658
+E HP+ DV+PSE +V D + R MAG H +V
Sbjct: 282 AEVHPIDDVMPSEVVEVKVDDEETNRTDEMAGDGDHAMV 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,455,315
Number of Sequences: 37544
Number of extensions: 449373
Number of successful extensions: 1312
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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