Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_O19
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.8  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    27   3.1  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   5.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.5  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        26   5.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   7.2  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   9.6  

>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 361 AASTPSSRPLTFTGGKPPS-TGAVVEQN 281
           A STP + P++   G PPS TGA +  N
Sbjct: 79  AGSTPKTTPVSLNAGVPPSNTGANITTN 106


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 249 DRCGEG*ALPLSFRHLLLRDGVLAEVEHRLPGLID 145
           +R  +G  LPL F + +LRD  L E+  + P LID
Sbjct: 171 ERFCQGKKLPLKFAYSILRD--LKELLEKTPSLID 203


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 177 LRVHHLAAGGGGTREGELIPLRTYPSPPSRGPEKGFCSTTAP 302
           LR++     G  T    +  +   PSPPSR  +  FC    P
Sbjct: 137 LRIYEAMEPGNLTYWTLMNEIALMPSPPSRNEQPAFCVNWCP 178


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 451 GSGPAGYSGTPAALSGRPDG 510
           G GP G+ G P    G P G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGG 246


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 355 STPSSRPLTFTGGKPPSTGAVVEQNP-FSGPRL 260
           S+ +S       G PP+TGA    NP +SGP+L
Sbjct: 71  SSANSHAYAPPSGPPPNTGANSYGNPNYSGPQL 103


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
 Frame = -3

Query: 502 AAQTVPLVSRN----TPLDQNQPAGSGRDTPPTGRSFVTP*QRARVPVACRAASTPSSRP 335
           +A + PL S N    T +    P+ +     PT     TP   A    A  A+STP S  
Sbjct: 385 SASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSV 444

Query: 334 LTFTGGKPPST 302
            + T     ST
Sbjct: 445 NSTTATSASST 455


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = -3

Query: 535 NVGRLGTAVRQAAQTVPLVSRNTPLDQNQPAG--SGRDTPPTGRSFVTP*QRARVPV-AC 365
           N      A R+ + +      ++P+    P+   S   TPP+  S V P  +   P+  C
Sbjct: 207 NAALKNQATRKPSSSPQTTQDSSPILTMAPSTPVSVGSTPPSTPS-VLPIAKQLAPMNVC 265

Query: 364 RAASTPSSRPLTFTGGKPPSTGAVVEQNPFSGPRL 260
           +A    S++  T T   PP    ++E   +  P++
Sbjct: 266 KAHIQASNQSRTLTTASPPEQIPLMEPQVYVNPQV 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,728
Number of Sequences: 5004
Number of extensions: 56910
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)