Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_O19
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 55  TPCPCLANRTGLVAADCRSHDARQSD 132
           +P P + NR+GLV+        R+ D
Sbjct: 378 SPLPSIRNRSGLVSGSSTPGTGREHD 403


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 222 PLSFRHLLLRDGVLAEVEHRLPGLIDGLPDIGLPSIVATTVGSDKS 85
           PL  +HL + D       H +PG++ G+    L + +AT    D S
Sbjct: 317 PLIQKHLKIHDTCGVHNLHGMPGILGGIFG-ALMAALATEASYDYS 361


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 436  PTRQAGSGPAGYSG 477
            P+RQ GSG  G+ G
Sbjct: 1923 PSRQTGSGHGGHGG 1936


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 441 PAGWFWSSGVFRDTSGTV 494
           PAGW W    F    G V
Sbjct: 162 PAGWIWGDQGFLKKLGAV 179


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 457 GPAGYSGTPAALSGRPDGL 513
           G  GY+G P  +SG  + L
Sbjct: 420 GIGGYNGLPTVMSGLDESL 438


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 207 HLLLRDGVLAEVEHRLPGLIDGLPDIG 127
           H LL+D V    E R   + DG+ +IG
Sbjct: 177 HALLKDPVKEFWERRTLQISDGIENIG 203


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 207 HLLLRDGVLAEVEHRLPGLIDGLPDIG 127
           H LL+D V    E R   + DG+ +IG
Sbjct: 230 HALLKDPVKEFWERRTLQISDGIENIG 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,464
Number of Sequences: 438
Number of extensions: 5351
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)