Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_O18
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    44   3e-05
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    41   2e-04
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    26   5.6  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   9.8  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 16/25 (64%), Positives = 23/25 (92%)
 Frame = -1

Query: 401 TSAWDVVVDLFFYRDPEESEKDEQQ 327
           T+AW+V+ DL+FYRDPEE E++E+Q
Sbjct: 195 TTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -3

Query: 579 ITEAS*VNIRXIAXCNTDS 523
           I EAS VNI  IA C+TDS
Sbjct: 137 IKEASFVNIPVIALCDTDS 155


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = -1

Query: 401 TSAWDVVVDLFFYRDPEESEKDEQQAK 321
           ++ WDV+ DL+FYRDPEE E++E+  K
Sbjct: 194 SAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -3

Query: 579 ITEAS*VNIRXIAXCNTDS 523
           I EAS VNI  IA C+TDS
Sbjct: 136 IKEASFVNIPVIALCDTDS 154


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
 Frame = +2

Query: 428 RHFTCQQPPXXTNRVGR----LWCCMGXQCPQILVG 523
           +H   Q P    N V R    +WCC G  C ++L G
Sbjct: 33  QHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAG 68


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 350 LQGHGRRTN----QPQHPRRWSRGSTPXSLRHFTCQQPP 454
           L+GH +  N     P +P   + G +  S+ H++  +PP
Sbjct: 288 LRGHEKDVNCVTWHPLYPNLLTTGGSDGSVNHYSLDEPP 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,510
Number of Sequences: 5004
Number of extensions: 40513
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)