Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_O18
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    47   2e-05
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    44   1e-04
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.4  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.8  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = -1

Query: 533 TQTPQLRFVDIXIPCNTK----VFPLYWXDXVVVGX*SA*GFXVCFPVTSAWDVVVDLFF 366
           T +P +R+VDI IP N K    +  L+W    +V            P    WDV+VDLFF
Sbjct: 154 TDSP-MRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRG----TILP-GHKWDVMVDLFF 207

Query: 365 YRDPEESEKDEQQAKEQ 315
           YRDPEE+++ E++A  Q
Sbjct: 208 YRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
 Frame = -1

Query: 533 TQTPQLRFVDIXIPCNTK----VFPLYWXDXVVVGX*SA*GFXVCFPVTSAWDVVVDLFF 366
           T +P +R+VDI IP N K    +  L+W    +V            P    WDV+VDLFF
Sbjct: 154 TDSP-MRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG----TILP-GHKWDVMVDLFF 207

Query: 365 YRDPEESEKDEQQ 327
           YRDPEE+++ E++
Sbjct: 208 YRDPEEAKEQEEE 220


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,259,108
Number of Sequences: 37544
Number of extensions: 315185
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)