Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_O17
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    30   0.32 
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    30   0.43 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   3.0  

>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 174 RSPSGVKTRSE*GGSRGSTLQPDTRRHPEDARPTGR----RGDSRRPTTSVS 317
           +SPSG K+ +    S     + +T    E A P  R    RG  RRP TSV+
Sbjct: 509 KSPSGTKSPASGETSEAGVKETETTTSSESALPDARKSRARGPVRRPPTSVN 560


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 136 PLNDSPALLHPASDLRPGSKPGQSRGVPAGQ-HYNQTRGATPRTPDRRVVE-AIVDDQRR 309
           P N++PA    ++  RP S P  S  VPA    Y   + A   +P +   + A  D + R
Sbjct: 258 PANETPASSSSSAKARPVSVPDMSSPVPASSVEYESLKAAVTYSPSQNPKKVAETDSESR 317

Query: 310 QS 315
           +S
Sbjct: 318 KS 319


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 199  GQSRGVPAGQHYNQTRG 249
            G S G PAG HY+  RG
Sbjct: 956  GYSNGPPAGNHYSSNRG 972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,977
Number of Sequences: 5004
Number of extensions: 42703
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)