Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_O17
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0570 + 5061600-5062142,5062790-5062972 34 0.11
05_07_0259 - 28737433-28738326 31 1.0
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 29 3.1
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 29 4.1
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 29 4.1
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 28 7.2
04_04_0786 - 28052981-28053040,28053123-28053222,28053447-280535... 28 7.2
02_05_0781 + 31715100-31715672 28 7.2
01_06_1487 - 37715421-37715942 28 7.2
11_04_0030 + 12510095-12510320,12510646-12510980,12511058-12511396 28 9.6
05_07_0104 + 27715123-27715350 28 9.6
05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306 28 9.6
03_05_0563 - 25651529-25651621,25651712-25651790,25651875-256519... 28 9.6
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 210 GGSRGSTLQPDTRRHPEDARPTGRRGDSRRPTTS 311
GG+RG ++ RR P TG G +RRPT++
Sbjct: 160 GGARGRAVRGSARRRPRKEETTGINGTARRPTST 193
>05_07_0259 - 28737433-28738326
Length = 297
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/72 (34%), Positives = 33/72 (45%)
Frame = +1
Query: 82 NDLQVLRADRGPKEFRAHPLNDSPALLHPASDLRPGSKPGQSRGVPAGQHYNQTRGATPR 261
+D V+ A P E+ ++ SP L+HPASD + R A RGA P
Sbjct: 128 DDATVIAAGVAPGEY---VISLSPRLMHPASDKAADAVANAVRRAVARMWLWDGRGAAP- 183
Query: 262 TPDRRVVEAIVD 297
RV EA+VD
Sbjct: 184 ---ARVTEAMVD 192
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 152 LHSYTRRPISVRGQNPVRVGGFPRVNTTTRHAAPPR--GRPTDGSSRR*STT 301
LH+ T S GQ PVR GG + +T R PPR G P S R S++
Sbjct: 411 LHAITSE--SQPGQAPVRTGGMRLMTSTGRDNQPPRSSGVPPSPSEWRSSSS 460
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -3
Query: 283 RRPVGRASSGWRRVSGCSVDPREPPYSDRVLTPDGDRTPGVRVQGS 146
RR G S G R +S R PP R+ GDR PG + GS
Sbjct: 53 RRRDGGRSRGGRELSNGYGHRRSPPPRSRLSARLGDREPGEVLSGS 98
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 158 SYTRRPISVRGQNPVRVGGFPRVNTTTRHAAPPRGRPTDGSSR--R*STTNDVSXXXXXX 331
SY+R P RG++ R R + +R +P R + SR R S + S
Sbjct: 139 SYSRSPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPRDSRS 198
Query: 332 XXXXXXDAAGVPGYPLGXKQPXGSERDTR 418
D+ G P + P GS RD+R
Sbjct: 199 PRGSPRDSRSPKGSPRDTQSPRGSPRDSR 227
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 265 ASSGWRRVSGCSVDPREPPYSDRVLTPDGDRTPGVRVQGS 146
+S+GW S VDP + P + L+P + P ++ GS
Sbjct: 474 SSNGWTNTSDECVDPVQVPLQLKQLSPTVEHCPKLKNSGS 513
>04_04_0786 -
28052981-28053040,28053123-28053222,28053447-28053574,
28053654-28053821,28053901-28054013,28054135-28054287,
28054385-28054528,28054794-28055529
Length = 533
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +2
Query: 149 PLHSYT-RRPISVRGQNPVRVGGFP---RVNTTTRHAAPPRGRPTDGSS 283
P+ S T RRP S ++ R G P R + RH APP PT SS
Sbjct: 12 PITSGTMRRPASTAERSKARGGDEPGTWRRPSFPRHGAPPHRPPTGSSS 60
>02_05_0781 + 31715100-31715672
Length = 190
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 218 PRVNTTTRHAAPPRGRPTDGSSRR*STT 301
P+ RHAA P RP+ +SRR STT
Sbjct: 57 PQRAAKKRHAAAPPPRPSASTSRRSSTT 84
>01_06_1487 - 37715421-37715942
Length = 173
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 210 GGSRGSTLQPDTRRHPEDARPTGRRGDSRRPTTS 311
GG+RG P T H ++ P GRRG RP S
Sbjct: 41 GGARGEVEIP-TEEHEDEPEPDGRRG--HRPVVS 71
>11_04_0030 + 12510095-12510320,12510646-12510980,12511058-12511396
Length = 299
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 509 LKYRNVRXNLNPLSPP*HHRKKLLLIGAELKXPSRPRSKGGTGQ 640
++Y NP H++KL+L E +P KG TG+
Sbjct: 217 IRYETQPNTSNPAGQSDSHKRKLVLSDDEGDDARKPEDKGATGK 260
>05_07_0104 + 27715123-27715350
Length = 75
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 301 GRRLSPRRPVGRASSGWRRVS 239
GRRL P P R W RVS
Sbjct: 31 GRRLHPPAPAARGGGAWNRVS 51
>05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306
Length = 433
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 210 GGSRGSTLQ-PDTRRHPEDARPTGRRGDSRRP 302
GG RG+ ++ RR P ARP R G RRP
Sbjct: 91 GGRRGAEVRGAGGRRAPPRARPPARGGAPRRP 122
>03_05_0563 -
25651529-25651621,25651712-25651790,25651875-25651920,
25652001-25652264,25652361-25652484,25652727-25652780,
25653589-25653657,25653752-25654021
Length = 332
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 107 TAGPRNLGPTH*TTPLHSYTRRPISVRGQNPVRVGG-FPRVNTTTRHAAPPRGRPTDGSS 283
+A PR + T T L S T P R + + + +P ++ +PPRGRP G +
Sbjct: 205 SASPRRMSTTA-TPKLMSGTTSPSKTRIEGYMSMTPWYPSSKQSSAANSPPRGRPNPGRT 263
Query: 284 RR 289
R
Sbjct: 264 PR 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,006,595
Number of Sequences: 37544
Number of extensions: 396182
Number of successful extensions: 1420
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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